Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1149g00008 ATGAATAATAATAATGATGCTTGCTCTCCCTCCTTCAACGGCGGATTTGGCGCCAATACCGCCGGTCAAATGCAATCGAACGGCGGCGTCTTTGCTTCCTTGTACTCCGCTTTGTCCAATGAGAATATTTCCTCGCTCTCAGCAAACTGCAGCAATGGCGGTGGCAGCGTCTCGCTTTACCCTTACTCTGACTCGGGAACTCAGTATGACTCATGCGTCATACAGAAACACCAGGATATGGTGAATCGTCACAGCATGTGCCTAAGTCGCCTTGTGGAAACTTGCAAAGAGGTCGAAGCTCTGCGGCAAGAGAATGGCCAGCTCTGTGCTGTGAACAAGGAGCTGCAGAAGCAGCTGAACATCGTTATTCAGGCTTCTCTGGAGAACCAATTCGGTGGTGGTTCGTCCGGCCAGACGCCGTTTGATGTCTTGCATGGGTTCCGTGGCTTGAACATTGGGGATGGGCAAGAGAACTGTGCTGATTGGAATAACAATAATAATAATAATATGGAGCTGCAACAAGTTTCGAATGAGAGTCCAACCAGCGTGATTGAGAATAACGGTGTTGAAGTGGAGAGGTTCTCGTTGCCAAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCCCAGTCTGCGGCCGTTGCCAGCAATAATAATGCTTGTCGCACTAAGGGTGCTACTCGCCCACGCGCGCCCTCCACTCCACCTGATGCCGTTCAAAAGGTATATGTCCGTGGAGGGCAGAAGGAGGAAGAGCCACTTGAGATGTCAGTGTATAACCAAGGGATGTTAAAGACTGAACTGTGTAACAAATGGCAGGAAACTGGCACATGCCCATATGGAGACCATTGCCAATTCGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTATACCGCAACCTAAGCACAGATCCATGAAGCTGGAAAGATAA 1050 0.5 MNNNNDACSPSFNGGFGANTAGQMQSNGGVFASLYSALSNENISSLSANCSNGGGSVSLYPYSDSGTQYDSCVIQKHQDMVNRHSMCLSRLVETCKEVEALRQENGQLCAVNKELQKQLNIVIQASLENQFGGGSSGQTPFDVLHGFRGLNIGDGQENCADWNNNNNNNMELQQVSNESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAVASNNNACRTKGATRPRAPSTPPDAVQKVYVRGGQKEEEPLEMSVYNQGMLKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIPQPKHRSMKLER 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1149g00008 349 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872
Gabi1149g00008 349 SUPERFAMILY CCCH zinc finger 299 333 IPR036855 GO:0046872
Gabi1149g00008 349 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Gabi1149g00008 349 SUPERFAMILY CCCH zinc finger 262 297 IPR036855 GO:0046872
Gabi1149g00008 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 291 IPR000571 GO:0046872
Gabi1149g00008 349 Gene3D - 259 298 - -
Gabi1149g00008 349 Gene3D - 299 335 - -
Gabi1149g00008 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 340 IPR045877 GO:0003729
Gabi1149g00008 349 Coils Coil 98 118 - -
Gabi1149g00008 349 FunFam Zinc finger protein 36, C3H1 type-like 1 299 335 - -
Gabi1149g00008 349 FunFam zinc finger CCCH domain-containing protein 15-like 259 298 - -
Gabi1149g00008 349 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Gabi1149g00008 349 SMART c3hfinal6 265 292 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1149g00008 Gabi-Chr1149 181528 183458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1149g00008 62 347 C3H Transcription Factor Family AT1G68200 51.852 7.99e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1149g00008 zf-CCCH 3.4e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1149g00008 K18753 - gmx:100819250 523.472