Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1149g00007 ATGGGTTTGCAAAACCAGTTAAACGACGTATCTTCGGGTTCAATTCCGTTACTTGTGTTGGCGCACATCGCCACCTGCGTCAACTACCTCCGCTCCTTGCTCTTCGCACTTCTCCAATCACTCGGTCTCTCCAGATTCCACACCGACCAGATCGTCGACGACCGCTTCTTCGCCGCCGTCGGATCCGGCCTCGCCGGCCTTATCATGCTCTCCGATCAGCTCGCCCTCAACAATCAATTTTTCTATAATCACGATGGCGCCGCCGACGATGACTGCGTGGTGTGCCAGACCACCTTCAAGTACGGGGACCAGGTTCGCATGCTGCCGTGCCGCCACGTCTTCCACCGACGGTGTTTCGACGGTTGGCTCCACCACTACAAGTTCAACTGTCCTCTCTGCCGCTCGCCACTACTCTCCGAAGAGCGCGTGGCTCTCGCGGAGCGCCGCGTTGGTCGCGAACTCCTCTCCTGGTTCTCACCGCAGTGA 486 0.5844 MGLQNQLNDVSSGSIPLLVLAHIATCVNYLRSLLFALLQSLGLSRFHTDQIVDDRFFAAVGSGLAGLIMLSDQLALNNQFFYNHDGAADDDCVVCQTTFKYGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLLSEERVALAERRVGRELLSWFSPQ 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1149g00007 161 Pfam Ring finger domain 90 134 IPR001841 -
Gabi1149g00007 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Gabi1149g00007 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 83 144 - -
Gabi1149g00007 161 SMART ring_2 92 133 IPR001841 -
Gabi1149g00007 161 SUPERFAMILY RING/U-box 80 139 - -
Gabi1149g00007 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1149g00007 Gabi-Chr1149 143023 144067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1149g00007 1 159 C3H Transcription Factor Family AT1G15100 49.068 2.96e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1149g00007 K16282 - gmx:100803789 268.085