Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1147g00020 ATGGGAACTCCCGAATTCCCAGATCTAGGAAAGCACTGTGCTGTCTCCGATTGCAAGCTTATTGATTTCTTGCCCTTCACCTGCGATCGCTGCAATCAGGTGTATTGTTTGGAGCACCGAAGTTATATTAAACATCAGTGTACAAAAGCTGACAAGCTAGATGTCACTGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGTCTAGTTCCTGACCAAGATCCAAATATAACTTGGGAGAATCATGTTAACACTGAGTGCGACCCGTCAAATTATGAGAAAGCCACGAAGAAGAAAAAATGCCCTGCCTCCGGATGCAAAGAAATCTTGGTATTCTCAAACACAATTAAGTGCAGGGACTGCTTGGTAGACCATTGTTTGAAGCATCGGTTTGGACCTGATCATAAATGTCCCGGACCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTGAATAGGAGTAGAAAAGAAGAGACAAACCCCAAGTCAAGTTCAACCTCATCATCTAAATGGACTTCAAGCTTTCTTAATGCGGCTTCTAACATTAGAGCTTCAGCCGAGGCAGGCATGTCAAAGTTGGGTGGCGACATTAACCAAGCCTGGCAGACAGCTAGGGATGGGGTGGGACAGAGCATCGCTACTTTGGTGGATCATGTGCAAAAGGTTCACGAAAGGAGTGGCAACCGATCTGGGGTGAATGTTACAATTGATGTTTGTCCTAAGTGTAGTAGGGGATTTCGAGACCCTGTGTCCCTTGTGGAGCATGTTGAAAGGGATCATGGCGGTAGTTCAAGAGCGTAG 807 0.4473 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKLDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKATKKKKCPASGCKEILVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKKLETSFSFMSLLNRSRKEETNPKSSSTSSSKWTSSFLNAASNIRASAEAGMSKLGGDINQAWQTARDGVGQSIATLVDHVQKVHERSGNRSGVNVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1147g00020 268 MobiDBLite consensus disorder prediction 154 173 - -
Gabi1147g00020 268 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gabi1147g00020 268 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gabi1147g00020 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 267 IPR013087 -
Gabi1147g00020 268 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gabi1147g00020 268 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gabi1147g00020 268 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gabi1147g00020 268 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gabi1147g00020 268 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gabi1147g00020 268 Gene3D - 2 57 IPR035896 -
Gabi1147g00020 268 ProSitePatterns Zinc finger C2H2 type domain signature. 241 262 IPR013087 -
Gabi1147g00020 268 Gene3D - 80 151 IPR035896 -
Gabi1147g00020 268 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 227 - -
Gabi1147g00020 268 SUPERFAMILY AN1-like Zinc finger 55 143 IPR035896 -
Gabi1147g00020 268 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1147g00020 Gabi-Chr1147 186555 189590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1147g00020 1 268 C2H2 Transcription Factor Family AT2G41835 62.544 2.68e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1147g00020 zf-AN1 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1147g00020 - - gmx:100786272 484.182