Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1144g00012 ATGATTCCATCACTTTGTGCTAACGGTTGTGGCTTCTACGGTTCTTCTGCAAGCAATAACCTTTGTTCAAAGTGTTACGATGATTTTCTCAAGAAAAACATCGTTAAATCACGTGAAGGTCTGGAAGATGAAACCAAGAACTTGAAGGATGAAACCTTTGTTGTTGATCAATCACCTACACATGCTTCTGAGAGCACTATCACTGATGATTTTGCTGCGATTTCTCTTACTGATTCCGAGACCATGAAGACCAAGAAAAAGAGGTGCAAGATCTGCAACAAAAATGTTCGATTATTAGGGTTCGAGTGCCGTTGCGGTGATGTGTTTTGTGGAAGACATAGATACCCAGAAGAGCATTCTTGCAGTGTGGATTTCAAGAAGATTGGTCGTCAATCTTTGGCTAAACAAAATCCTAAGTGTGCAGGTGATAAATTAGTAGATATGGTCTAA 450 0.3978 MIPSLCANGCGFYGSSASNNLCSKCYDDFLKKNIVKSREGLEDETKNLKDETFVVDQSPTHASESTITDDFAAISLTDSETMKTKKKRCKICNKNVRLLGFECRCGDVFCGRHRYPEEHSCSVDFKKIGRQSLAKQNPKCAGDKLVDMV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1144g00012 149 FunFam Zinc finger AN1-type containing 6 62 144 - -
Gabi1144g00012 149 Pfam A20-like zinc finger 4 26 IPR002653 GO:0003677|GO:0008270
Gabi1144g00012 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 146 - -
Gabi1144g00012 149 Gene3D - 62 143 IPR035896 -
Gabi1144g00012 149 SMART AN1_Zf_4 89 126 IPR000058 GO:0008270
Gabi1144g00012 149 SUPERFAMILY AN1-like Zinc finger 77 143 IPR035896 -
Gabi1144g00012 149 ProSiteProfiles Zinc finger AN1-type profile. 83 129 IPR000058 GO:0008270
Gabi1144g00012 149 Coils Coil 31 51 - -
Gabi1144g00012 149 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Gabi1144g00012 149 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Gabi1144g00012 149 Pfam AN1-like Zinc finger 89 124 IPR000058 GO:0008270
Gabi1144g00012 149 Gene3D - 1 50 - -
Gabi1144g00012 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1144g00012 Gabi-Chr1144 197531 197980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1144g00012 5 145 C2H2 Transcription Factor Family AT3G52800 37.419 4.24e-27 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1144g00012 - - gmx:102666624 193.356