Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1141g00011 ATGGCGATGAGGGCAGCACTGGCGGCGCCCCGCGGTTTGCGGCGGCTTTTCTGCACGAACTCAACCTCTCCTTCTCCTACCTTCCCTTTCGTTCCTCCGCCGTCTGCGGCGGCGCCTTCCGCCCGACAGATGGCGGATCCCAGCACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACTACAGAAAGGCTCAGGGAAGAATTTGCAAAGTTTGGTGAAGTTGTTAATGCAAGGGTGGTTACTGATCGAGTCTCAGGTTACTCTAAGGGGTTTGGTTTTGTGAAATATGCTACTATAGAAGAGGCTGCAAAGGGCATTGAGGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCGCCACCGGGACAACCTGTAAATATGACTCCTCAGTATGGCCGGCAGTGA 435 0.5287 MAMRAALAAPRGLRRLFCTNSTSPSPTFPFVPPPSAAAPSARQMADPSTNLFVSGLSKRTTTERLREEFAKFGEVVNARVVTDRVSGYSKGFGFVKYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPVNMTPQYGRQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1141g00011 144 SUPERFAMILY RNA-binding domain, RBD 26 141 IPR035979 GO:0003676
Gabi1141g00011 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Gabi1141g00011 144 Gene3D - 28 134 IPR012677 -
Gabi1141g00011 144 FunFam RNA recognition motif-containing protein 28 139 - -
Gabi1141g00011 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gabi1141g00011 144 PANTHER NUCLEOLAR PROTEIN 8 34 130 - -
Gabi1141g00011 144 SMART rrm1_1 50 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1141g00011 Gabi-Chr1141 147381 160683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1141g00011 40 142 Eukaryotic Initiation Factors Gene Family AT1G49760 37.391 5.00e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1141g00011 - - psat:127105180 213.001