Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1136g00016 ATGGAGGAAAGAACGTTTTTTAGTTCCGGGCATGAGGTTAAGGTTGATGAGGCCACAAAAAGCTTCCACGTGGCTCCAAATTCCGTGCAGTTTCCCGTACCACTGGCGGAGTCGCCGGCGCCGGTAACGGCACCTGCTCCGGCGAGTGCAGCGGGCACACCTGGTAGTACAGATGGAAAGAAGAAAAGGGGTAGGCCTAGGAAGTATGGGCCGGACGGCAAGGTGGCGCTGTCGCCGATGCCGATTTCGTCATCGATTCCGTTGACCGGAGAGTTCTCAGCCTGGAAAAGGGGTAGAGGGAGGCCTGTTGAATCAATCAAGAAGTCTTATAAGTTTTATGAAGTTCAAAATGCAGGACCAGGTAATGGAATTGCATACTCAATTGGTGCCAATTTCACACCTCACGTGCTCACAGTAAATGCTGGCGAGGATGTTACTATGAAGATCATGTCTTTCTCTCAAAAAGGATGCTATGCTATATGCATTCTCTCTGCAAATGGCACAATTTCAAATGTTACACTTCGTCAACCAACTTCATCAGGGGGTACTTTAACATATGAGGGGCGGTTTGAGATTCTTTCATTGTCTGGTTCATTTATGCCAACTGAGAATGGATTAACAAAGAGCAGGTCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCTGGTTTGCTGGTAGCTGCAAGTCCTGTGCAGGTTGTGGTGGGAAGTTTTCTTGCAGGTCACCAACAGGAGCAGAAACCAAAGAAGCAGAGGGTGGAACATATATCAACAATTGCACCTACACATGTTACTCCAATTTCTGCTGGAGAAATAAAAATCAGTCTTTGTGGAGTACAACCTATTATGACACCTGCTGCTTTTCAATTGGATAACATTACTCATTTTAACAATGGTCAATGCTCTAGGAACTCATCTGCTGATGGTGAAGCTCCTTTGCCTGAAAAGGAATCTAATCGCAACCAATCAGATGCTGGATTTGCATGTTCCCTGTGA 1023 0.4692 MEERTFFSSGHEVKVDEATKSFHVAPNSVQFPVPLAESPAPVTAPAPASAAGTPGSTDGKKKRGRPRKYGPDGKVALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSYKFYEVQNAGPGNGIAYSIGANFTPHVLTVNAGEDVTMKIMSFSQKGCYAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGLTKSRSGGMSVSLAGPDGRVMGGGLAGLLVAASPVQVVVGSFLAGHQQEQKPKKQRVEHISTIAPTHVTPISAGEIKISLCGVQPIMTPAAFQLDNITHFNNGQCSRNSSADGEAPLPEKESNRNQSDAGFACSL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1136g00016 340 FunFam AT-hook motif nuclear-localized protein 1-like 134 264 - -
Gabi1136g00016 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Gabi1136g00016 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 252 - -
Gabi1136g00016 340 Gene3D - 134 267 - -
Gabi1136g00016 340 SMART AT_hook_2 60 72 IPR017956 GO:0003677
Gabi1136g00016 340 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Gabi1136g00016 340 MobiDBLite consensus disorder prediction 325 340 - -
Gabi1136g00016 340 CDD DUF296 133 247 IPR005175 -
Gabi1136g00016 340 ProSiteProfiles PPC domain profile profile. 129 271 IPR005175 -
Gabi1136g00016 340 MobiDBLite consensus disorder prediction 310 340 - -
Gabi1136g00016 340 MobiDBLite consensus disorder prediction 33 76 - -
Gabi1136g00016 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 322 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1136g00016 Gabi-Chr1136 151863 156768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1136g00016 43 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 61.905 7.69e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1136g00016 - - gmx:102667678 474.552