Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1136g00001 AGTGAAAATCATGACGAGGATGTTGGAGAAGAGAATCCTATGGAAGATGATGAAGCAACATCTAAGTTTAACGGCATAGACCCTATTTCTGCCACCCTTTCCGACCCTAAAGTCCTTGACTGCTGCAGCTGCTGTCAACCATTGACTATTCCTTGCGAGAAAGGGCATTTTGCTTGCTTTACCTGTTGTGCTCTTGGAAGGGAGTGTCTTGAGTGCTCATCTCGCATTCCTTACAACCGTTGCAGAGCTATTGAGAAAGTGTTGGAATCTATTAACATATCATGCCTTAATGCAAAATATGGTTGCAAAGAGACATGCAGTTACAGTGAAAGGAATAACCATGAGAAGAAATGTATCCACATTCCATGTTTCTGCCCACACAAAGGTTGTGACTTTGTTGCCTCATCAAAGGAGTTATCACTCCACTTCAGCAATAAACATAAAACTTCTGGAATCCAATTTTTATACAATCACAACTTCCATGTATCCGTGAATCCTTATGATGAATTCCTTGTTCTTCAAGAGCAAACAGATGGAAATATGTTTATTCTCAAAAACAATGTTGTTGAGAATATGGGAAATGTGGTCACTATTAGCTGCATGGGGCCTAACTCTTCTCAGCCAGGGCATGCTTATGCTATAGTCGCCAAGTCTCAGGGATGCTGTCTAATGTTGAAGTCTTTTACCAAGAACATTCAAAGGGGCATTGCAGATATTCCTTCATCAGGGTTCCTTGTGATTCCATTTGACCGTTCTGGTAATTATGCATATCTCCATCTGGAGATTTGCATAAGAAAAAGATAG 804 0.4055 SENHDEDVGEENPMEDDEATSKFNGIDPISATLSDPKVLDCCSCCQPLTIPCEKGHFACFTCCALGRECLECSSRIPYNRCRAIEKVLESINISCLNAKYGCKETCSYSERNNHEKKCIHIPCFCPHKGCDFVASSKELSLHFSNKHKTSGIQFLYNHNFHVSVNPYDEFLVLQEQTDGNMFILKNNVVENMGNVVTISCMGPNSSQPGHAYAIVAKSQGCCLMLKSFTKNIQRGIADIPSSGFLVIPFDRSGNYAYLHLEICIRKR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1136g00001 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 143 IPR013083 -
Gabi1136g00001 267 SUPERFAMILY TRAF domain-like 90 265 - -
Gabi1136g00001 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 266 IPR044286 -
Gabi1136g00001 267 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1136g00001 267 Pfam Seven in absentia protein family 80 247 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi1136g00001 267 ProSiteProfiles Zinc finger SIAH-type profile. 90 148 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1136g00001 Gabi-Chr1136 2445 4242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1136g00001 37 168 C3H Transcription Factor Family AT2G41980 29.078 7.43e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1136g00001 K04506 - qsa:O6P43_009323 258.84