Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1133g00011 ATGAGGGATGATTCTCCTCCTCACACAGCTGCGGTGACTCCTACACCTACGCCATCTGTTACACCCCAGCAAGGGGAGAGTGGAGCTAGTCACCATACTGGTGAGACTAGTCTGCCCACTGTTGATCCTACTTTTGTTGCTCAAACTTCTGTTGTTGCTGAGCAGTTTGATGAGGCTGTTGATGAGGAGAGGAGACTTATTTCCTTCAGAAAACATAAACCTCATACGTTTCTGGGGTCAAAGTACCCAAAGGTTGTGACTACCTGGCTGCAGGGGATGGACAAGATTTTCCAGGTTATGAGGTGTCCAGATCCTCAGAAACTTAGTTATTCTGTATATATGCTGGAGGGTGATGCACACGAGTGGTGGTGCAATACTTCTCGTCCTTATGTTATTCAAGAGTATTTTTCCAGGGATATCCAGGAAGCAGAGTTGGGTCAGGGATCTTTATCTGTTGTTGCTTATTTGGCCAAGTTTAATGAATTGGTCAAGTTCGCTATTTATGGGGGTACTCTGCCTACTCTGAATTTCTTATCTGCAAAGTATCCAAAATCTAGTTCTGCCAGAGATCAAGAGGTAAAGAGGACGGCTGGTCCTTCAGGTTCTAATTATAGGGGTGGTTACCATTATAATAATAATAGAGGTAGGGGGTTGCAAGTAAGGCAACCTCCTGGTCAATTCAAGAGAGATGATGCCCAGAGGGGTGGATTTAATAACATAAATTCTACACCACAGTGTGAAAAATGTAAGAGGTACCACATGGGTCCTTGTACGGCTGGTCCAAATTCTTGTTTTATATGTGGTAAGGTTGGACATTATGTTAGGGAGTTTTATAGAAATATTGGGCAGGCTGCAAATCTGCAGGCCTTGCCATTTGTTCATACTGTGGGACATGTGTATACTACCAATGTGCAACAGACAAAAGAAGCACTGAATCTGGTTAAAGGAGTGATGCATTCTTTCATCGCAGAATATGTGGCTAAGGGATTAAATTTAATGGTTGGTGATCTGGGTTATGTACTACTGGATGGACTTGTTGGTGATAAGGAAGAGGAAATTCTGAATATTCCGATGGTTAATGAATTTGTGGATGTATTTCTTGATGAAATATCGGATTTCCACCTGAGATGGAGATTGAGTTCTCCATTGATCTGTTTCCTGCTGAATAAGATTACTATTAAGAACAGGTACCCTTTGCCACGCATTGATGATCTTCTGGACCAGTTGAGGGGAGCGTGTGTATATTCTAAGATTGATCTCCGGTCTGGATATCACTTGATCCGGATTAAGCCAGAGGATGTGCCTAAAATGGTGTTCCGAGCCAAATACAGACATTTTGAATACCAGGGTAAAGCTAATGTAGTGGCAGATGCTTTGAGCAGGAAGTCTGTCAGTTTGTCTCTTATGATGATGTGGGATAATGAGTTACTGGAGAAGATTAAAGAGACTCAAATACAAAATGATAGTGTTAAGTATCTGAAGGGCCAGCGTGGCATATCTTGGAATGAACATGGACTATTATTATATTATGGCAGGATTGTTGTGCCAAAGGTGTTAGCAGAGGAGGTTATGACCAAGCCCCATAAGGGTCAGTATGCTATTCATCCAGGTGCGACGAAAATGCATCAAGATCTGAAAGTGAAATTCTGGTGGCCTGGGATGAAAAAGGATGTTGCAGAACTTACGAAGTCTGCACATTTTCTGCTAGTGCGAGTGGATTTCTCTACTGAGAGATTGGCAAAGCTTTATATGAATGAAATAGAAACTACTGTGCAGATTGAGATGATTAGAGAGAAACTGAAACATGCACAGAATCGACAGAAAAGCTATTATGATAATAAACATAGACTGCTTGAATTTGAAGAAGAAGACCATCTATTTGTGTGGTTATCTTCGGTTACGGGTGTTGGCCGTGCATTGGGAGTAAAGAAGCTGAGTCCTAAATTTATTGGGTCGTATCAGATTATGAAAAATGTTGGATTAGTGGCCTATCAGATTGCCTTATCTCCCCAGTTAGCCAATCTACATGATATTTTTCATGTGTCACAACTACGACGTTATATTCTGGATGAATCACATGTGGTGATACCGGATGATATTGAAATTCGGGAGAATCTGAAGACTCTTGTCAGGCCTGTTGATATACTTAACCGCAGTGAAAAGAGACTGAGAAGCAAGATTATTCCAATGTTAAAGATTCAGAGGGGAGGACGCACACCTGAGGAGGCTACTTGGGAGTGGGAGGATGAGATTCTCTGCCTATATCCTAAGTTAGAGGACAACATCACATCATTTCAATTCATCAAGGACCCTGAAACTCTTACCTCCAATAGTGGAAACTTCACCTTGGGGTTCTTCAGCACTGACTCTACAAATCGCTATGTAGGAATTTGGTGCAAGTCCAACCTCACTGTCACATGGGTGGCTAATAGAAACCAACCACTGAATGATTCTTCTGGGGTTGTAACAATATCTGAAGATGGCAATCTTGTGGTATTGAATGGAAACAAACAGGTTCTTTGGTCATCAAATGTGTCCAATATTGCATCCAATTCTACTTCCCAACTTTCAGATTATGGAAGCCTTCTCTTGCTGGATAACACAACAGGAAACACCATATGGGAGAGTTTCAACAATCCTTCAAATACTTGGTTACCCCATATGAAAATTACAAGCAACAAAATAACAGGGGAGAAAGTAGAACTTACATCATGGAAAAGCCTTTCTGATCCATCCATTGGAAGCTTTTCTTCTAGTGTTGAACGCCTAAAGATTCCTGAAGTGTTCATTTGGAATGGAACCCAGCCATACTGGCGCAGTGGTCCATGGAATGGTCAAGTTTTTATAGGGGTACTAAACATGGGAACTTTGTATCTCAGTGGTTTTCAAGTTCAAGATGATGGTAATGGAACAATTGATGTATCTTTTACGGTATATGGGATAGGACCCTTAATGTATACCTTGAATTCCCAAGGCCAATTGCTGGAAAATCAATGGGATGATGAGCAGAAGCAATGGCAAGTTACATGGAATAGTCACGAATCAGATTGTGATGTTTATGGTATATGTGGCGCATTTGCAAGCTGTAGTTCACAGGGCTCACCAATATGTAGCTGTTTGAAAGGGTTTGAGCCAAGGAACAAAGAGGAATGGAATAGACAAAACTGGACTAATGGATGTGTTAGAAGCACACCTCTGCAGTGTGAAAGGACCAACAATCAAAACACAAGTGTGGATAGTAATAAAGCAGATGGGTTTTTGCCATTGCAGATGGTCAAAGTTCCTGATTTTGCACAAGGGTCATCTGTTACACAAGACACATGCAGAAGCGGGTGCTTGGAGAATTGCTCTTGCATTGCATATGCATATGATGATGCAATTGGCTGTATGTCTTGGAATGGGAACCTAATTGATATACAACAATTCCCAAGTGGAGGAACTGATCTTTACATTCGTGTAGCCTATACAGAACTTGGTGTGCCAGGGCTTTGCACCCAGCAAAGAAAAAATAACAGTGGATTTATTCGATTTAACAAAGGTGAAACATCTGAATCTGTAGAACACACAAACGACAATGTAATTGGAGAATTATCACAAGCTAAGCTACAGGAGCTATTACATTTTAGCTTTGAAAAGCTTGCAACTGCCACAAACTACTTCCACTTATCCAACAAACTTGGCCAGGGTGGTTTCGGTGCAGTATACAAGGGGAAACTGCAAGATGGTAAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTTTTGGTAATTTCTAAGCTTCAACACCGCAATCTTGTAAAACTTCTTGGCTGCTGTATTGAAGGAGAAGAAAAGATGCTGATATATGAGTACATGCCAAATAGAAGTTTGGATGCATATGTGTTTGATCCATCAAAAAATAAACTCTTGGATTGGAGAAAGCGCTTTAACATAATAGAAGGAATAGCTAGAGGATTGCTTTATCTCCACAGAGATTCCAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAGCTAAATCCAAAAATATCAGACTTTGGCATGGCAAGAATCTTTGGAGGGAGAGAAGATCAAGCCAATACCCAAAGGATTGTGGGAACCTATGGCTATATGTCCCCTGAATACGCCATGCAAGGAATGTTTTCTGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTTGAGATTGTTTGTGGAAGACGAAACTCAAGCTTTTATGACAATGAAAATTCTCTTACCCTCTTGGGACTTGTCTGGATACAATGGAAGGAAGAAAATGTTATATCTTTAGTAGATCCAGGAATATATGATCCTAGCCTTGAAAAGCATATTATGAGGTGCATACACATAGGACTTTTGTGTGTACAAGAATTTGCTGCAGACAGGCCCAATATGGCTGCAGTAATTTCTATGCTTAACAGTGAGATTGCGGATCTTCCTCCTCCAAGGCAACCTGCATTCATCCTGAGGCAGAATATGCTTAGTTCACTATCCTCCGATGAAAGCCTTAAATTGTACTCCATCAACAATGTTAGTATTACAGACATCCATGGCAGATAG 4617 0.4083 MRDDSPPHTAAVTPTPTPSVTPQQGESGASHHTGETSLPTVDPTFVAQTSVVAEQFDEAVDEERRLISFRKHKPHTFLGSKYPKVVTTWLQGMDKIFQVMRCPDPQKLSYSVYMLEGDAHEWWCNTSRPYVIQEYFSRDIQEAELGQGSLSVVAYLAKFNELVKFAIYGGTLPTLNFLSAKYPKSSSARDQEVKRTAGPSGSNYRGGYHYNNNRGRGLQVRQPPGQFKRDDAQRGGFNNINSTPQCEKCKRYHMGPCTAGPNSCFICGKVGHYVREFYRNIGQAANLQALPFVHTVGHVYTTNVQQTKEALNLVKGVMHSFIAEYVAKGLNLMVGDLGYVLLDGLVGDKEEEILNIPMVNEFVDVFLDEISDFHLRWRLSSPLICFLLNKITIKNRYPLPRIDDLLDQLRGACVYSKIDLRSGYHLIRIKPEDVPKMVFRAKYRHFEYQGKANVVADALSRKSVSLSLMMMWDNELLEKIKETQIQNDSVKYLKGQRGISWNEHGLLLYYGRIVVPKVLAEEVMTKPHKGQYAIHPGATKMHQDLKVKFWWPGMKKDVAELTKSAHFLLVRVDFSTERLAKLYMNEIETTVQIEMIREKLKHAQNRQKSYYDNKHRLLEFEEEDHLFVWLSSVTGVGRALGVKKLSPKFIGSYQIMKNVGLVAYQIALSPQLANLHDIFHVSQLRRYILDESHVVIPDDIEIRENLKTLVRPVDILNRSEKRLRSKIIPMLKIQRGGRTPEEATWEWEDEILCLYPKLEDNITSFQFIKDPETLTSNSGNFTLGFFSTDSTNRYVGIWCKSNLTVTWVANRNQPLNDSSGVVTISEDGNLVVLNGNKQVLWSSNVSNIASNSTSQLSDYGSLLLLDNTTGNTIWESFNNPSNTWLPHMKITSNKITGEKVELTSWKSLSDPSIGSFSSSVERLKIPEVFIWNGTQPYWRSGPWNGQVFIGVLNMGTLYLSGFQVQDDGNGTIDVSFTVYGIGPLMYTLNSQGQLLENQWDDEQKQWQVTWNSHESDCDVYGICGAFASCSSQGSPICSCLKGFEPRNKEEWNRQNWTNGCVRSTPLQCERTNNQNTSVDSNKADGFLPLQMVKVPDFAQGSSVTQDTCRSGCLENCSCIAYAYDDAIGCMSWNGNLIDIQQFPSGGTDLYIRVAYTELGVPGLCTQQRKNNSGFIRFNKGETSESVEHTNDNVIGELSQAKLQELLHFSFEKLATATNYFHLSNKLGQGGFGAVYKGKLQDGKEIAVKRLSRASGQGLEEFMNEVLVISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNRSLDAYVFDPSKNKLLDWRKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGREDQANTQRIVGTYGYMSPEYAMQGMFSEKSDVFSFGVLLLEIVCGRRNSSFYDNENSLTLLGLVWIQWKEENVISLVDPGIYDPSLEKHIMRCIHIGLLCVQEFAADRPNMAAVISMLNSEIADLPPPRQPAFILRQNMLSSLSSDESLKLYSINNVSITDIHGR 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1133g00011 1538 SUPERFAMILY Protein kinase-like (PK-like) 1204 1522 IPR011009 -
Gabi1133g00011 1538 SUPERFAMILY DNA/RNA polymerases 388 448 IPR043502 -
Gabi1133g00011 1538 SMART blect_4 765 880 IPR001480 -
Gabi1133g00011 1538 Gene3D - 397 424 IPR043128 -
Gabi1133g00011 1538 CDD PAN_AP_plant 1064 1154 - -
Gabi1133g00011 1538 ProSiteProfiles Bulb-type lectin domain profile. 759 877 IPR001480 -
Gabi1133g00011 1538 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 752 1482 - -
Gabi1133g00011 1538 Pfam Domain of unknown function (DUF3403) 1493 1538 IPR021820 GO:0004674
Gabi1133g00011 1538 Pfam D-mannose binding lectin 804 906 IPR001480 -
Gabi1133g00011 1538 SMART serkin_6 1220 1464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1133g00011 1538 MobiDBLite consensus disorder prediction 14 40 - -
Gabi1133g00011 1538 CDD B_lectin 766 880 IPR001480 -
Gabi1133g00011 1538 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 756 877 - -
Gabi1133g00011 1538 CDD RT_LTR 388 456 - -
Gabi1133g00011 1538 Gene3D Transferase(Phosphotransferase) domain 1 1296 1498 - -
Gabi1133g00011 1538 Pfam PAN-like domain 1081 1139 IPR003609 -
Gabi1133g00011 1538 Pfam Protein tyrosine and serine/threonine kinase 1221 1491 IPR001245 GO:0004672|GO:0006468
Gabi1133g00011 1538 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 388 449 - -
Gabi1133g00011 1538 Gene3D - 476 567 - -
Gabi1133g00011 1538 Gene3D - 754 878 IPR036426 -
Gabi1133g00011 1538 ProSiteProfiles PAN/Apple domain profile. 1068 1154 IPR003609 -
Gabi1133g00011 1538 CDD STKc_IRAK 1226 1492 - -
Gabi1133g00011 1538 Pfam S-locus glycoprotein domain 938 1046 IPR000858 GO:0048544
Gabi1133g00011 1538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1341 1353 IPR008271 GO:0004672|GO:0006468
Gabi1133g00011 1538 SMART ntp_6 1081 1153 IPR003609 -
Gabi1133g00011 1538 Pfam Integrase zinc binding domain 515 564 IPR041588 -
Gabi1133g00011 1538 ProSiteProfiles Protein kinase domain profile. 1220 1506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1133g00011 1538 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1182 1295 - -
Gabi1133g00011 1538 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1296 1499 - -
Gabi1133g00011 1538 ProSitePatterns Protein kinases ATP-binding region signature. 1226 1248 IPR017441 GO:0005524
Gabi1133g00011 1538 SUPERFAMILY alpha-D-mannose-specific plant lectins 795 945 IPR036426 -
Gabi1133g00011 1538 Gene3D Phosphorylase Kinase; domain 1 1195 1295 - -
Gabi1133g00011 1538 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1133g00011 Gabi-Chr1133 188468 201734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1133g00011 1206 1538 Receptor kinase-like Gene Family AT4G11530 57.227 1.26e-121 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1133g00011 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1133g00011 - - mtr:25498365 1081.24