Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1133g00010 ATGCCAGTAATGGATTTCAAAAGCTGCAAAAACTTGTTGTATGTTTTTATTTTCATGAGTTGTTATTTTTTAGATGTTAATGGTATTGCCAAAGACAGCATCACATCAATTCAATTCATCAAGGACCCTGAAACTCTTAGCTCCAATAGTGGAAACTTTACCTTGGGGTTCTTCAGCACTGACTCTACAAATCGCTATGTAGGAATTTGGTGGAAGTCCAACCTCACTGTCACATGGGTGGCTAATAGAAACCAACCATTGAATGATTCTTCTGGGGTTGTTACGATATCTGAAGATGGCAATCTTGTGGTATTGAATGGGAAGAAACAGGTTGTTTGGTCATCAAATGTGTCCAATATTGCATCCAATTCTACTTCCCAACTTTCAGATTATGGAAGCCTTCTCTTGCTGGAAAGCACAACAGGAAACACCATATGGGAGAGTTTCAACCATCCTTCAAATACTTGGTTACCCCGTATGAAAATTACAAGCAACAAAATAACATGTGAGAAGGCAGAACTTACATCATGGAAAAGCCTTTCTGATCCATCCATTGGAAGCTTTTCTTTCAGTGTTGAACGCCTAAAGATTCCTGAACTGTTCATTCTGAATGGAACTCAACCATACTGGCGCAGTGGTCCATGGAATGGTCAGGTTTTTATAGGGGTATTAAACATGGAAACTGCGTATCTTAATGGTGTTCATGTTGAAGATGATGGGAATGGAACAGTTGAAATATCTTTCACAGCATATGGGAGGGGACTCGTAATGTCTACCTTGTATCCCCAAGGCCAATATGTGCAAAAAAATTGGGATGATGAGAAGGAGCAATGGCAAGTTACATGGACTAGCCACCAATCAGATTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAGCTCCCAGGGCTCACCAATATGTAGCTGTTTGAAAGGGTTTGAGCCAAGGAACAAAGAGGAATGGAATAGGCAAAACTGGACTCGTGGATGTGTTAGAAGCACACCTCTGCAATGTGAAAGGACCAACAATCAAAACACAAGTGTGGACAGTAATAAAGCAGATGGGTTTTTGACATTGCAGATGATCAAAGTTCCTGATTTTGCACAAGGGTCATCTGTTACACAAGACACATGCAGAAGCGGGTGCTTGGAGAATTGCTCTTGCATTGCATATGCATATGATGATGAAATTGGCTGTATGTCTTGGAATGGGAATCTAATTGATATACAACAATTCCCAAGTGGAGGAATTGATCTTTACGTTCGTGTAGCCTATACAGAACTTGGTATGACAGATAAAGAGAGAAACATAAAAGTCATCATTACAGTTACAATTACAGTTACAATGATAATAGGAACTTTCGTATTTGTCACTTGTGCATATGTCATTTGGAGAAGGGCTTTGCATCTAGGTGAAACATCTGAATCGGAAGAACACACAAACGACAAAGTAATTGGAGAATTATCACAAGCTAAGCTACAAGAGCTATTACAATTTAGCTTTGAAAAGCTTGCAACTGCCACAAACTACTTCCACTTATCAAACAAACTTGGCCAGGGTGGTTTCGGTGCAGTATACAAGGGAAAACTGCAAGATGGTAAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCATGAATGAAGTTGTAGTGATATCTAAGCTTCAACATCGCAATCTTGTAAGGCTTCTAGGCTGCTGTATTGAAGAAGAGGAAAAGATGTTGATATACGAGTACATGCCAAACAGAAGTTTGGATGCATTTGTGTTTGATCCATCAGAAAATAAACTCTTGGATTGGAGAAAGCGCTTTAGCATAATAGAAGGAATAGCTAGAGGATTGCTTTATCTCCACAGAGATTCCAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAACTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATCTTTGGAGGCAGTGAAGATCAGGGAAATACCCAAAGGGTTGTGGGAACATATGGCTATATGTCCCCTGAATATGCAATGCAAGGAGTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTAGAGATTGTTAGTGGAAGAAAAAACTCAAGTTTGTATGACAATGAGAATTCTCTTACCCTCTTGGGACTTGTCTGGATACAATGGAAGGAAGAAGATGTTTTATCTTTAGTGGATCCAGGAATATATGATCCTAGCCTTGAAAAGCATATTATGAGGTGCATACACATAGGACTTCTGTGTGTACAAGAATTTGCTGCAGACAGGCCCAATATGGCTGCAGTAATTTCTATGCTTAACAGTGAGATTGTGGATCTTCCTCCTCCAAGGCAACCTGCATTCATCCTGAGGCAGATTATGCTTAGTTCACTATCGTCTGATGAAAGCCTTAGATTGCATTCCATCAACAATGTTAGTATTACAGACATCCATGGCAGATAG 2496 0.395 MPVMDFKSCKNLLYVFIFMSCYFLDVNGIAKDSITSIQFIKDPETLSSNSGNFTLGFFSTDSTNRYVGIWWKSNLTVTWVANRNQPLNDSSGVVTISEDGNLVVLNGKKQVVWSSNVSNIASNSTSQLSDYGSLLLLESTTGNTIWESFNHPSNTWLPRMKITSNKITCEKAELTSWKSLSDPSIGSFSFSVERLKIPELFILNGTQPYWRSGPWNGQVFIGVLNMETAYLNGVHVEDDGNGTVEISFTAYGRGLVMSTLYPQGQYVQKNWDDEKEQWQVTWTSHQSDCDVYGICGAFASCSSQGSPICSCLKGFEPRNKEEWNRQNWTRGCVRSTPLQCERTNNQNTSVDSNKADGFLTLQMIKVPDFAQGSSVTQDTCRSGCLENCSCIAYAYDDEIGCMSWNGNLIDIQQFPSGGIDLYVRVAYTELGMTDKERNIKVIITVTITVTMIIGTFVFVTCAYVIWRRALHLGETSESEEHTNDKVIGELSQAKLQELLQFSFEKLATATNYFHLSNKLGQGGFGAVYKGKLQDGKEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEEEEKMLIYEYMPNRSLDAFVFDPSENKLLDWRKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQGNTQRVVGTYGYMSPEYAMQGVFSEKSDVFSFGVLLLEIVSGRKNSSLYDNENSLTLLGLVWIQWKEEDVLSLVDPGIYDPSLEKHIMRCIHIGLLCVQEFAADRPNMAAVISMLNSEIVDLPPPRQPAFILRQIMLSSLSSDESLRLHSINNVSITDIHGR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1133g00010 831 SMART blect_4 37 152 IPR001480 -
Gabi1133g00010 831 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Gabi1133g00010 831 Pfam Domain of unknown function (DUF3403) 786 831 IPR021820 GO:0004674
Gabi1133g00010 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 775 - -
Gabi1133g00010 831 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gabi1133g00010 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Gabi1133g00010 831 CDD B_lectin 38 152 IPR001480 -
Gabi1133g00010 831 CDD STKc_IRAK 519 785 - -
Gabi1133g00010 831 ProSiteProfiles Bulb-type lectin domain profile. 31 149 IPR001480 -
Gabi1133g00010 831 Gene3D Transferase(Phosphotransferase) domain 1 589 790 - -
Gabi1133g00010 831 ProSiteProfiles Protein kinase domain profile. 513 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1133g00010 831 Pfam D-mannose binding lectin 76 178 IPR001480 -
Gabi1133g00010 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 149 - -
Gabi1133g00010 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Gabi1133g00010 831 SMART ntp_6 353 425 IPR003609 -
Gabi1133g00010 831 SMART serkin_6 513 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1133g00010 831 SUPERFAMILY Protein kinase-like (PK-like) 498 813 IPR011009 -
Gabi1133g00010 831 Pfam Protein tyrosine and serine/threonine kinase 514 784 IPR001245 GO:0004672|GO:0006468
Gabi1133g00010 831 Gene3D - 26 150 IPR036426 -
Gabi1133g00010 831 ProSiteProfiles PAN/Apple domain profile. 340 426 IPR003609 -
Gabi1133g00010 831 Gene3D Phosphorylase Kinase; domain 1 488 588 - -
Gabi1133g00010 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 217 IPR036426 -
Gabi1133g00010 831 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Gabi1133g00010 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 477 588 - -
Gabi1133g00010 831 PIRSF SRK 3 831 IPR024171 GO:0004674
Gabi1133g00010 831 CDD PAN_AP_plant 336 426 - -
Gabi1133g00010 831 Pfam PAN-like domain 353 411 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1133g00010 Gabi-Chr1133 155900 159698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1133g00010 437 810 Receptor kinase-like Gene Family AT4G23190 51.579 2.83e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1133g00010 PK_Tyr_Ser-Thr 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1133g00010 - - tpra:123892366 1132.86