Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1133g00006 ATGGGAATGAGGCTGCTTTTCTGTTTCTGCTCTGCAATTACATGCACACAACAAACTTCTCCCAACAAGACAAGCTTTAATCCAATGACTCCCAATCCTGACACGACGAATGTTCCTTTGTCACAATGTTCCTGTAATCCCAAAAGCTTCAATCCAAGAAGGTATCAATCTGAAGTTTTTGAAGTTGCAGTGCAGAGGAATACTATTGCAGTGCTGGATACTGGTGCTGGAAAGACAATGATAGCAGTGATGCTTATTAGACACATTGGCAAATTTATCAAATCTACTGATCAAAAGAAATTGATTGTTTTCTTGGCTCCCACTGTCCATCTTGTTAATCAGCAATTCGAGGTTATCAGGGACTGCACAGATCTGGCAGTGGAAGAATACTATGGGGCCAAGGGAATAGATGACTGGAATTCAAGTTGCTGGGAGAAGGAAATTGAAGAACATGATGTAATGGTCATGACACCACAAATTCTCTTGGATGGCCTCAGAAAGGCATTCTTCAATATGAAAAGAGTCAGCTTGCTGGTTATTGATGAATGCCATCGTGCAAGTGGGAACCATCCTTATGTTAAAATAATGAAGGAATTTTATCACACATCTAGTAACAAGCCAAAGATTTTTGGAATGACAGCATCACCAGTAGTTGGAAAGGTTATTTCATCCGCTATGGACTGCAATGGTCAGATATCTAGTCTTGAAAGCATTTTAGATTCTCAGATTTATGCTATTAAAGATAGGACAGAGTTGGAACTATGTGTGCCTTCTGCTATGGAAACTTGTAGGTTCTATAATGAAGCACAATTTCTCAGCAAGGATTTGAAATTAAAGATGGAAGGTTTATGGTCTCAGTTCGATGCTTCATTGCTGAGACTGCAACAGTTAGTGGAATGTCAATACAAAGACATTCGTCATAAACTTGAGAAAATGCAGAAGCGATTATTCAACGACTATTCAAAGATTTTGTATTGTCTTGATGATCTTGGCCTTGTGTGTGCTTATGAGGCTGCTAAATTCTGTCTGGAGAACAGCTCATTTCCCCAACAGGAATGTGAATTTAATAGCGAAGGTTGTTCGCAGTATGCACATTTCTTTAATGAATTGCTACAACTTATTGGAGCCTATTTTACTACTGATGATACCAACTCTGGAGACTTCGGTCTTGACCTTTCAAATGCAGTAGAATTGGGATATATGTCTCCAAAATTATATGAACTAATACAAATCCTTAAATCATTTGGAGAAAGCAAGGATGTTCTATGCCTTGTATTTGTTGAAAGAATTGTTACAGCTAAAGTCATTGACAGATTTGTGAAGAAGGTTAAGTTCTTGTCCCATTTTACAGTCTCATATTTGACTGGGAGCAATACATCGACTGATTCGGTGGCACCAAAGGTGCAGAAAGAAATCTTACATCTGTTTTCCAGTGGAAAGGTCAATATACTATTTGCCACTGATGTTGTTGAGGAAGGAATTCATGTGCCAAAATGCTCCTGTGTCATACGTTTTGATCTGCCCAAGACAGTTCGTAGTTATGTCCAGTCAAGGGGGCGGGCTCGACAAAATAATTCTCTATTTGTCATGATGGTTGAGAGGATCCGGGTACGGGGAAGATGA 1623 0.3925 MGMRLLFCFCSAITCTQQTSPNKTSFNPMTPNPDTTNVPLSQCSCNPKSFNPRRYQSEVFEVAVQRNTIAVLDTGAGKTMIAVMLIRHIGKFIKSTDQKKLIVFLAPTVHLVNQQFEVIRDCTDLAVEEYYGAKGIDDWNSSCWEKEIEEHDVMVMTPQILLDGLRKAFFNMKRVSLLVIDECHRASGNHPYVKIMKEFYHTSSNKPKIFGMTASPVVGKVISSAMDCNGQISSLESILDSQIYAIKDRTELELCVPSAMETCRFYNEAQFLSKDLKLKMEGLWSQFDASLLRLQQLVECQYKDIRHKLEKMQKRLFNDYSKILYCLDDLGLVCAYEAAKFCLENSSFPQQECEFNSEGCSQYAHFFNELLQLIGAYFTTDDTNSGDFGLDLSNAVELGYMSPKLYELIQILKSFGESKDVLCLVFVERIVTAKVIDRFVKKVKFLSHFTVSYLTGSNTSTDSVAPKVQKEILHLFSSGKVNILFATDVVEEGIHVPKCSCVIRFDLPKTVRSYVQSRGRARQNNSLFVMMVERIRVRGR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1133g00006 540 FunFam Endoribonuclease dicer-like protein 47 285 - -
Gabi1133g00006 540 SMART ultradead3 48 241 IPR014001 -
Gabi1133g00006 540 FunFam Endoribonuclease dicer-like 1 395 539 - -
Gabi1133g00006 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 234 IPR014001 -
Gabi1133g00006 540 PANTHER DICER-RELATED 66 534 - -
Gabi1133g00006 540 Gene3D - 47 284 IPR027417 -
Gabi1133g00006 540 CDD DEXHc_dicer 50 248 - -
Gabi1133g00006 540 Pfam Helicase conserved C-terminal domain 409 521 IPR001650 -
Gabi1133g00006 540 Gene3D - 397 539 IPR027417 -
Gabi1133g00006 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 532 IPR027417 -
Gabi1133g00006 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 407 540 IPR001650 -
Gabi1133g00006 540 CDD SF2_C_dicer 400 532 - -
Gabi1133g00006 540 SMART helicmild6 437 524 IPR001650 -
Gabi1133g00006 540 Pfam DEAD/DEAH box helicase 54 214 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1133g00006 Gabi-Chr1133 76677 89424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1133g00006 420 521 Eukaryotic Initiation Factors Gene Family AT3G19760 33.028 2.69e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1133g00006 K11592 - cave:132188155 675.626