Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1127g00002 ATGCGTCCACCGTTGAAGAGGGTCAATTTCTGCAGAGGAGACAAGGTTGAGGTTTGCAGCAAAGAAGAAGGGTTTCTCGGTTCCTATTACGAAGCCACCATTGTTTCCCACCTTGACAATGGCCTCTACGTTGTTCGCTACAAGAACCTTCTCGAGGACAACGAATCTCAGCCTCTCACCGAAACCCTTTATCCCAAGGAGCTTCGTCCATTGCCACCTCGTGTCCACGCTTCTCAGTTTGCGCCCTATCAGAAAGTCGATGCTTTTGACAACTATGGTTGGTGGGTTGGTTCGATCACTGGCAGATCTGGTTCTCACTACTACGTGTACTTTTCTACCACAAACGAAGAGATAGCGTACCCTTCTTCTCATATCAGGGTTCATCATGAATGGTTTAACGGGAATTGGATTTTGTTTAATTAA 423 0.4657 MRPPLKRVNFCRGDKVEVCSKEEGFLGSYYEATIVSHLDNGLYVVRYKNLLEDNESQPLTETLYPKELRPLPPRVHASQFAPYQKVDAFDNYGWWVGSITGRSGSHYYVYFSTTNEEIAYPSSHIRVHHEWFNGNWILFN 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1127g00002 140 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Gabi1127g00002 140 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 138 - -
Gabi1127g00002 140 SMART agenet_At_2 78 133 IPR014002 -
Gabi1127g00002 140 SMART agenet_At_2 8 76 IPR014002 -
Gabi1127g00002 140 Gene3D - 2 81 - -
Gabi1127g00002 140 CDD Tudor_Agenet_AtDUF_rpt2_4 84 127 - -
Gabi1127g00002 140 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1127g00002 Gabi-Chr1127 3770 4192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1127g00002 20 131 PHD Transcription Factor Family AT5G58610 28.358 1.14e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1127g00002 - - gmx:106794115 216.468