Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1126g00020 ATGGCTGAGAGCTTCAACTGTGCCACCTCTAACCTTCTTTGTTCCGAGAACAAAGAATGTGATGATGCAGATGGGTTTAGATTCTCAACTTTCTTGGACGACAGAAACCTTAACTCTGATCATAAGTGTCCGAGTTCGGACAATGGTGGATCGGAGTTTTTAACGTGTTTTCTGGTACAGAGTGAGGAAACTGTGAGGGTTATGGTTGAGAGGGAGAGGGAGCATTTGCCCAGGGATGATTATCTGAAGAGGCTGCGTAGTGGGGACTTGGACTTGAGTGTTAGGAGGGATGCTCTTGATTGGATTTGGAAGGCTCATACTTATTATGGTTTTGGACCCTTGAGCTTTTGTCTATCTGTGAACTACTTGGATCGCTTCCTATCAGTTTTTGAATTACCGAGAGGTAAAGGTTGGCCTGTGCAATTGTTAGCGGTAGCTTGCTTGTCAATTGCAGCTAAAATGGAGGAGATTAAAATGCCTCATTCTGTAGATTTACAGGTTGGAGATCCAAAGTTTGTATTTGAAGCTAAAAGCATTCAAAGAATGGAACTATTGGTATTAAGATCATTGAGATGGAAAATGCATGCTTTAACTCCTTGTTCCTTCATAGACTACTTCCTCGGTAAGACCAATTGTGAGCAGCAGCATCAAGCAAAGTCATCCATTTCAAGATCGGTACAGCTGATCCTTAGCATAATCAGAGGTATTGACTTCTTGGAATTTAAGCCTTCTGAAATTGCTGCAGCAGTGGCAATTTCTGTTTCAAGGGAATTGCAAGTAGAGGAGATTGATAAGGCCATAACTGGTTGCTTCATTGTAGAGAAGGAGAGAATTCTAAAGTGTGTTGAACTGATAAGAGATTTGTCCTTGATCAATGTTGCTGCTAATTTGGGCAGCAAGTTTGCGCCATTGGTGCCTCAGAGCCCTGTTGGGGTGTTGGATGCTGGATGCTTGAGTTCTAGGAGTGATGAATTAACAGTTGGGTCATGTCCAAATTCTTCACATGATAGTCCAAATACAAAGAGGAGCAAATCAGGTGGACCTTGTAATGGGACTTCCGAGTCATGA 1068 0.4251 MAESFNCATSNLLCSENKECDDADGFRFSTFLDDRNLNSDHKCPSSDNGGSEFLTCFLVQSEETVRVMVEREREHLPRDDYLKRLRSGDLDLSVRRDALDWIWKAHTYYGFGPLSFCLSVNYLDRFLSVFELPRGKGWPVQLLAVACLSIAAKMEEIKMPHSVDLQVGDPKFVFEAKSIQRMELLVLRSLRWKMHALTPCSFIDYFLGKTNCEQQHQAKSSISRSVQLILSIIRGIDFLEFKPSEIAAAVAISVSRELQVEEIDKAITGCFIVEKERILKCVELIRDLSLINVAANLGSKFAPLVPQSPVGVLDAGCLSSRSDELTVGSCPNSSHDSPNTKRSKSGGPCNGTSES 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1126g00020 355 MobiDBLite consensus disorder prediction 325 355 - -
Gabi1126g00020 355 Gene3D - 68 284 - -
Gabi1126g00020 355 Pfam Cyclin, C-terminal domain 198 289 IPR004367 -
Gabi1126g00020 355 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Gabi1126g00020 355 FunFam D6-type cyclin 191 283 - -
Gabi1126g00020 355 CDD CYCLIN_AtCycD-like_rpt1 94 192 - -
Gabi1126g00020 355 CDD CYCLIN_AtCycD-like_rpt2 198 285 - -
Gabi1126g00020 355 Gene3D - 78 195 - -
Gabi1126g00020 355 FunFam D2/4-type cyclin 78 190 - -
Gabi1126g00020 355 PANTHER CYCLINS 61 286 IPR039361 -
Gabi1126g00020 355 SUPERFAMILY Cyclin-like 56 195 IPR036915 -
Gabi1126g00020 355 SMART Cyclin_C_2 197 324 IPR004367 -
Gabi1126g00020 355 Pfam Cyclin, N-terminal domain 65 194 IPR006671 -
Gabi1126g00020 355 SMART cyclin_7 100 188 IPR013763 -
Gabi1126g00020 355 SUPERFAMILY Cyclin-like 179 290 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1126g00020 Gabi-Chr1126 151717 154307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1126g00020 60 266 Core Cell Cycle Gene Families AT5G65420 64.904 1.30e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1126g00020 K18810 - gmx:100794010 469.544