Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1123g00005 ATGAGGAAAAAGCTCGATACACGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTAGCAGTTCCTGTTTTAGTGTCTAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGAGACATCGTCAGCAGGGTTCCTGATTATGGGCATGGACATGGACATGGACATGGACATGGCCATGGCCATGGCCATCCTGAGGCTGGAGCTGATGATCGTTCCCTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGCAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGCATGAGTTAGGCCATACTGGTCGAGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGGCTCGAACTGTAGAAAGAGAGACCTGTCACCAGCAGCAGGTTGAATCTGAGCCCTGCTCCTCTGTTCAGCAAAGTATCAAAGATGTCCCTAATGCAAGTATGGCAATAGATAATGATCCAGAATCCAAGGAGTTACCAAAGGAGAACATTGTGGTTCCTGAGGAAAGCTCTCAATCTCTCCGTAACATTGATCTGAATGCCAACATAAATGAAAATGAGGAAAAAAATGCTAGCATAGCATTTCAGGCTTCATTGCCTGAACCTGCAATAGAGACTAAGCATGAAGAACTTCCAGGATGGTCCCTTTCTGACGTGGACAAGATGGCCATTGACACTATGCAGCTTGCAAACCTTAGTAGTCGACTAGAAGAGGATGAAGAAGATTATGATGAGGAAGGGTAA 882 0.449 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHGHGHGHGHGHPEAGADDRSLPKRRKAAGDDCNDSDEEAKRSKMHELGHTGRGRGRGRGRGRGRGARTVERETCHQQQVESEPCSSVQQSIKDVPNASMAIDNDPESKELPKENIVVPEESSQSLRNIDLNANINENEEKNASIAFQASLPEPAIETKHEELPGWSLSDVDKMAIDTMQLANLSSRLEEDEEDYDEEG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1123g00005 293 MobiDBLite consensus disorder prediction 158 172 - -
Gabi1123g00005 293 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Gabi1123g00005 293 Coils Coil 275 293 - -
Gabi1123g00005 293 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Gabi1123g00005 293 MobiDBLite consensus disorder prediction 91 148 - -
Gabi1123g00005 293 MobiDBLite consensus disorder prediction 91 185 - -
Gabi1123g00005 293 SUPERFAMILY Histone-fold 4 99 IPR009072 GO:0046982
Gabi1123g00005 293 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 133 - -
Gabi1123g00005 293 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1123g00005 Gabi-Chr1123 183487 195254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1123g00005 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.169 1.62e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi1123g00005 CBFD_NFYB_HMF 1.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1123g00005 K21752 - gmx:100810093 413.69