Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1123g00004 ATGGCAGAAACTGCAGTATCTTTTGTTGTGCAGCATTTGTGCCAACTTCTAGTAGAAGAAGCGAATTTGCTCAGAGGGGTCACAAATGACTTCACATCTATCAAAGGTGAACTTGAGAGCATCCAAGCCTTCTTGAAGGATGCAGACAGAAGAGCTAGAGATGAAGGAGACACCAACGAAGGAATAAAAACGTGGGTGAAGCAACTCAGAGAAGCATCTTTTCACATAGAAGATGTCATTGATGAATACATCATGTATGTTGCACAGAGAATCAATCATCATGGATGCTTAGCCTCACTCCAAAAGATTGTTCACGTGATCAAAAATTTGAAGCATCGTCATAGGATTGCATCTGAGATTCAAGACATCAAATTTTCTGTTAATGGAATCAAAGAAAGAGGTGAAAGTTACAAGTTTCAGCGGTCTTCACATGAACAAGGATCAAGCAGCAGTGGAATATGGAATGATCCTAGATTGGCTTCCCTTTTCATTGAAGAAGCTGAAATTGTTGGATTCGAAAACCCAAGGGATGAACTTGTTGGTTGGTTAGTGGATGGAGCAACAGAGCGCACCGTGATTTCTGTTGTTGGAATGGGGGGACTTGGAAAAACCACTCTTGCCAAAAATGTTTTTGAGAACCAGCAAGTGAAAGGGCACTTCGATTGTCATGCATTCATCATAGTTTCTCAATCAAATTCAATAGAAGGCTTGTTGAAAAACTTGATGAAAGAGTTTTGCAAGGTGACTGAGGAGCCTCTTCCTCAAGGAATAAACACAATGGACAAGATGTCACTCCTTTCTGTAGTGAGGCATTACCTGCAGGGAAAGAGGTATGTAATCTTCTTTGATGATGTATGGAAAGTAGATTTTTGGGATGAGATCAAACTTGCCACACTTGATAACAAAATGGGAAGTAGGATAATGATCACATGCAGGAACTTGGAAGTTGCCAATTATTGTAAGAAAGATTCCCATGTTCAAGTACTAAAGTTGCAACCCTTGCCTGAAAATAAAGCATGGGAACTCTTCTGCAAGAAAGCATTTCATCTTGATTTTAATGGAAATTGTCCATCAGAGCTGGAAGAAATGTCCAAGGAGATTGTTAAAAAATGTGAGGGGTTACCCCTTGCAATTGTGGCCATTGGAGGTCTTATGTCAACAAAAGACAAAACTGTGTTTGAATGGATAAAATTATGCCAAAACCTTAGTTTTGAACTAGAGAGAAATCCCCATTTAACTAGTTTAACTAGAATTTTAGCCCTCAGTTATGATGACTTGCCTTACTATTTGAAATCATGTATCTTGTATTTTGGAATATATCCAGAGGACTACTCCATCAGGTGCATGAGATTGGTTAGGCAATGGATAGCTGAAGGGTTTGTCATATATGAGGAGGGAAAAACTTTGGAGCAAGTTGCAGAAAAGTACTTGAAAGAGTTGATCGACAGAAGCTTGGTTCAAGTCTCCAAAAATAACTATGATGGTAAAGCATCAAGTTGCCGAGTCCATGATTTCATACGTGATATGGTCATCAAAAAAATGAAGGACTTAAATTTCTGTCGTGTTGTTCGTGAAGATGATCAACCAACCGTTGATGCAACAACTCGACGCTTGGCCATAGCAACTAGTTCCTGTGATGTTCTTGCATGGATTGCACAAGTGAATTGCAAGTTCCGGTCCATGTATATGTTTGAAGCAGCAAGTGAATTGCCAGATCAATTTTTGAGTGGATTCTTTGCAAAATCTAAGCTTTTGAAAGTGTTGGATTTGGAAGGGTCATCATTGAGTTATGTTCCTAATGATTTGGGGAGTAATTTTCACTTGAGGTACTTGAGCTTGAGGAAAACAAATATTAAGATCATTCCAAAATCCATAGGTGAACTTCAAAACCTAGAAACCTTGGATCTGAAAGAAACACAAGTGCATGACTTACCAAGTGAGATAAACAAGCTTAAAAAGTTACGCCATCTTTTAGTTTACTACAGAGGTGTGACTTTAGGTTTTAGTGGTGAAACTGGAGTGCGGTTGAAGGGAAGTATTGGAAACTTGACATCTCTACAAAAGCTTTGTCATGTGGAGGCAGACCATGGTGGATTAAACCTAATAACAGAGCTAAGAAAGTTGAGACAGTTAAGGAAGTTAGGCTTAAAGAATGTGAAGAGAGAATTCCGAACCGCGCTGTGTGACTCAATAAAGGAGATGATCTGCCTTGAATCTCTTTATATTAGTGCAATAAGTGAAGATGAAATCATAGATTTGCAGTTTATTTCATCTCTCCCTAAACTTAGAAGACTTCACTTGTTTGGTGGCTTAGAAGAGTTGCCAAATTGGGTTCCAAGGCTTGAGCTTCTTGTTAGGTTGTCATTCCGATATTCCAAGTTGAAGGATGATCCCCTGAAGTCACTTAAGGATCTGCCAAATTTGCTGCGTCTCTCAATTACATGTGATGCGTATGTTGGTGAAATGTTGCATTTTGAAGTGGGATTTCAGAAATTAAAGAGACTATATCTTATAGAGTTGAATAATGTGAATTCTATTGTTATAGACAATGGAGCTTTACCTGCTCTTGATCGAATGCAATTGATGCGCATGCCTCAACTAAAGGAGATTCCCTCTAGCTTCCACCTACTTGAAAACCTTGAAACATTGTATTTGACTTATATGCCCCATGAGTTCATCCAAAGCATTGATCCAAATCATGGATCCAAGTATTGGGTCATCAAACATGTGCCTTTTGTATCTATCAAATAG 2751 0.3882 MAETAVSFVVQHLCQLLVEEANLLRGVTNDFTSIKGELESIQAFLKDADRRARDEGDTNEGIKTWVKQLREASFHIEDVIDEYIMYVAQRINHHGCLASLQKIVHVIKNLKHRHRIASEIQDIKFSVNGIKERGESYKFQRSSHEQGSSSSGIWNDPRLASLFIEEAEIVGFENPRDELVGWLVDGATERTVISVVGMGGLGKTTLAKNVFENQQVKGHFDCHAFIIVSQSNSIEGLLKNLMKEFCKVTEEPLPQGINTMDKMSLLSVVRHYLQGKRYVIFFDDVWKVDFWDEIKLATLDNKMGSRIMITCRNLEVANYCKKDSHVQVLKLQPLPENKAWELFCKKAFHLDFNGNCPSELEEMSKEIVKKCEGLPLAIVAIGGLMSTKDKTVFEWIKLCQNLSFELERNPHLTSLTRILALSYDDLPYYLKSCILYFGIYPEDYSIRCMRLVRQWIAEGFVIYEEGKTLEQVAEKYLKELIDRSLVQVSKNNYDGKASSCRVHDFIRDMVIKKMKDLNFCRVVREDDQPTVDATTRRLAIATSSCDVLAWIAQVNCKFRSMYMFEAASELPDQFLSGFFAKSKLLKVLDLEGSSLSYVPNDLGSNFHLRYLSLRKTNIKIIPKSIGELQNLETLDLKETQVHDLPSEINKLKKLRHLLVYYRGVTLGFSGETGVRLKGSIGNLTSLQKLCHVEADHGGLNLITELRKLRQLRKLGLKNVKREFRTALCDSIKEMICLESLYISAISEDEIIDLQFISSLPKLRRLHLFGGLEELPNWVPRLELLVRLSFRYSKLKDDPLKSLKDLPNLLRLSITCDAYVGEMLHFEVGFQKLKRLYLIELNNVNSIVIDNGALPALDRMQLMRMPQLKEIPSSFHLLENLETLYLTYMPHEFIQSIDPNHGSKYWVIKHVPFVSIK 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1123g00004 916 Gene3D Ribonuclease Inhibitor 558 902 IPR032675 -
Gabi1123g00004 916 Gene3D - 158 328 IPR027417 -
Gabi1123g00004 916 Pfam NB-ARC domain 175 425 IPR002182 GO:0043531
Gabi1123g00004 916 Gene3D - 334 422 IPR042197 -
Gabi1123g00004 916 SUPERFAMILY L domain-like 501 903 - -
Gabi1123g00004 916 FunFam Probable disease resistance protein At1g61300 156 325 - -
Gabi1123g00004 916 PRINTS Disease resistance protein signature 371 385 - -
Gabi1123g00004 916 PRINTS Disease resistance protein signature 626 642 - -
Gabi1123g00004 916 PRINTS Disease resistance protein signature 272 286 - -
Gabi1123g00004 916 PRINTS Disease resistance protein signature 192 207 - -
Gabi1123g00004 916 PANTHER DISEASE RESISTANCE PROTEIN RP 33 847 IPR044974 GO:0006952
Gabi1123g00004 916 CDD RX-CC_like 2 132 IPR038005 -
Gabi1123g00004 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 437 IPR027417 -
Gabi1123g00004 916 Pfam Rx N-terminal domain 5 91 IPR041118 -
Gabi1123g00004 916 FunFam Probable disease resistance protein At5g66910 333 422 - -
Gabi1123g00004 916 Gene3D - 423 514 IPR036388 -
Gabi1123g00004 916 FunFam Probable disease resistance protein At1g63360 423 512 - -
Gabi1123g00004 916 Gene3D - 4 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1123g00004 Gabi-Chr1123 105661 109129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1123g00004 193 382 WRKY Transcription Factor Family AT5G45050 30.052 9.60e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1123g00004 K13457 - gmx:100801561 1006.13