Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1123g00003 ATGGCAGAAACTGCAGTATTGTTTGCCCTGAAGCAAGTACAACTGTCACAACTCCTAAATGATGAAACAAATCTTCTGAGAGGAGTCCATAAAGGTTTTTCAGACATCAAAGATGAACTAGAAAGCATTCAAGCCTTCCTCAAAGATGCAGATAGAAGGGCAACAGATGAAGCAGACACCAATGATGGAATAAGAACTTGGGTGAAGCAACTCAGAGAAGCATCTTTTCGCATAGAAGACGTCGTTGATGAATACCTCTGGTTGATGCACAAGGCACATCATCCCAGATCTACAGCTTTAGTCTGCATGATTGCAACCTTAATACCCCGTCACAGGATAGCTTCTGAGATTCAGGACATTAAATTGTCAGTTTGTGGAATCAAGGAAAGAAGTGAAAGGTATAACTTTCAAGTTTCACATGAACAAGGATCAAGCAGGTTTGATCCTCGATTGGCATCCCTTTTCATTGAAGAAACTGAAATTGTAGGATTTGAATCCCCAAGAGAAGAATTGATTGGTTGGTTATTGGAAGGTGCAGCTGAGCGCACAGTGATTTCAGTAGTTGGAATGGGGGGTCTTGGAAAAACCACTCTTGCCAAGTACGTTTTTGATAGTCAAAAGTTAAGAGGGCACTTTGATTGTCGTGCTTTCATCACAGTTTCTCAATCATACACTGTGAGAGGGTTATTGATAGTCATGATGGAGCAGTTTTGTAAAGAGACTAAAGATCCTTTTCCGCAGATGTTACGCGAAATGGATGAGAAGTCACTAATTACAGAAGTGAGGCTATATCTGCAGAATAAGAGGTATTTGATATTCTTTGATGATGTATGGCAAGTAGATTTTTCAGACCAGGTTGAATTGGCCATGCCTAATAACAACAAAGGTAGTAGGATTGTGATCACCACTAGAATGATGCATGTCGCAGAGTTTTCCAAGAAATCCTTTCTTGTTCACGTTCACAACCTTCAACTTTTGCCTCCAAACAAAGCATGGGAACTCTTCTGCAAGAAGGCATTTAGATTTGAGATTGATGGGCGTTGTCCAGCAGTGCTTGAGGCTATGTCAATTGAAATTGTTCAAAGATGCAAGGGGCTACCTCTGGCTATTGCGGCCATTGGTGGTCTATTTTCAACAAAATCTAAAACCATCTTTGAATGGCAGAAAGTGAGTCAAAATCTGAGCCTGGAGTTGGGGCGAAATGCCCATTTAACTAGTCTAACAAAGATTTTATCTCTTAGTTATGATGACCTGCCTTACTATTTGAAACCATGCCTTTTTTATTTTGGTATTTATCCAGAGGACTACTCCATTAGTCGTAAGAGTTTAACTCAACAATGGATAGCTGAAGGGTTTGTTAATTCTGAGGAAAGAAGAACTACGGAACAAGTTGCAGAGGAGTACTTGTCTGAGTTAATTCATAGAAGTCTGGTTCGAGTTTCCAAAGTGTGCTTTGATGGGAAAGTTAAAATTTGTCAAGTTCATGATTTATTACATCAAATGATCATTAGAAAAATGAAGGATTTGAGATTTTGCCATGTTGTGCATGAGAATGATCAATCAGTTGCAGTTGGAATAAATAGACGCCTATCTATTGGGGCTAATTCCAACCATTTGTTGAAGAGCACTAGCAACTCACACATTCGTGCTATTCATGTTTTTGAAAAAGGTGGATTGCTTAAGCCTTTCATGGGTAGATTATCTTCAAAGTGTAGGATTTTGAAAGTACTCAACTTCGAAGGTACATCGTTGAATTATGTTCCTAATAATTTGGGGAATCTTTTCCACTTGAGGTACATAAACCTAAAGAATACAAAAGTACAGGTTCTTCCTAAATCTATTGGTAAGCTACAGAACCTAGAGACCTTGGATATAAGACAAACCCTCGTGCGTGAGTTACCAAGTGAAATAAACAAGCTCACAAAGCTGCGACATCTTCTTGCTTGCCATCGAAACTACGAAGCTGGTTATTCTCTTATGGGCTTTACAACTGGTGTGCAGATAGAAAAAGGTATTAAAAACTTGACTTCCCTGCAAAATCTTTACTATGTGGAGGTAGATCATGGGGGCATAGACCTCATCCAAGAGATGAGAATGTTAAGACAGTTAAGAAAGCTAGGCATAAGGAATGTACGGAGAGAATATGGGGATGCACTATGTGCTTCAATGGTAGAGATGAAACACCTTGAATTACTTAATATCACTGTAATAGCTGAGGATGAATTCATTGACTTGGACTCTATATCATCCCCTCCCCAACTTCGGCGGCTTCATTTGAAAGCTAGATTAGAGAAGTTGCCTGATTGGATTCCAAAACTTGAGTATCTTGTTAAGCTAAGGCTGTGTTTATCCATGTTGAAAGATGATCCACTAGAATCACTGAAAAACTTGCCGAATCTACAGCAGCTCACTGTGTCGGACAATGCCTATGATGCTGAAATTTTGCATTTTCAAAATGAAGGGTTTCCTAAGTTGAAGGTATTGAAACTCATTCGTTTGAATAGAATAAATTCCATTCTTATAGACAAAGGAGCTTTGCTTTCTCTTCAAGCTTTGAAATTTGTCAAAATCCCCCAGTTGAAGAAGGTCCCCTCTGGCATCAAACCATTGAAAAATCTTCAAGTTATTGACTTCCATGATATGCCAGCTGAATTTGTTGAGAGCATTGATCCTAAAAAAGGGCAAGACTACTTCATTATCAAGCATGTTCCCCTTGTAATTATTCGTCGCTGGATCGGTCCAAGATATTTTGACAATGAAATCCAAACTATTCACTCGTCCTCTTCAGAGTCATAA 2796 0.3909 MAETAVLFALKQVQLSQLLNDETNLLRGVHKGFSDIKDELESIQAFLKDADRRATDEADTNDGIRTWVKQLREASFRIEDVVDEYLWLMHKAHHPRSTALVCMIATLIPRHRIASEIQDIKLSVCGIKERSERYNFQVSHEQGSSRFDPRLASLFIEETEIVGFESPREELIGWLLEGAAERTVISVVGMGGLGKTTLAKYVFDSQKLRGHFDCRAFITVSQSYTVRGLLIVMMEQFCKETKDPFPQMLREMDEKSLITEVRLYLQNKRYLIFFDDVWQVDFSDQVELAMPNNNKGSRIVITTRMMHVAEFSKKSFLVHVHNLQLLPPNKAWELFCKKAFRFEIDGRCPAVLEAMSIEIVQRCKGLPLAIAAIGGLFSTKSKTIFEWQKVSQNLSLELGRNAHLTSLTKILSLSYDDLPYYLKPCLFYFGIYPEDYSISRKSLTQQWIAEGFVNSEERRTTEQVAEEYLSELIHRSLVRVSKVCFDGKVKICQVHDLLHQMIIRKMKDLRFCHVVHENDQSVAVGINRRLSIGANSNHLLKSTSNSHIRAIHVFEKGGLLKPFMGRLSSKCRILKVLNFEGTSLNYVPNNLGNLFHLRYINLKNTKVQVLPKSIGKLQNLETLDIRQTLVRELPSEINKLTKLRHLLACHRNYEAGYSLMGFTTGVQIEKGIKNLTSLQNLYYVEVDHGGIDLIQEMRMLRQLRKLGIRNVRREYGDALCASMVEMKHLELLNITVIAEDEFIDLDSISSPPQLRRLHLKARLEKLPDWIPKLEYLVKLRLCLSMLKDDPLESLKNLPNLQQLTVSDNAYDAEILHFQNEGFPKLKVLKLIRLNRINSILIDKGALLSLQALKFVKIPQLKKVPSGIKPLKNLQVIDFHDMPAEFVESIDPKKGQDYFIIKHVPLVIIRRWIGPRYFDNEIQTIHSSSSES 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1123g00003 931 Gene3D - 151 318 IPR027417 -
Gabi1123g00003 931 CDD RX-CC_like 2 129 IPR038005 -
Gabi1123g00003 931 Gene3D - 415 506 IPR036388 -
Gabi1123g00003 931 Gene3D - 9 114 - -
Gabi1123g00003 931 Pfam NB-ARC domain 167 417 IPR002182 GO:0043531
Gabi1123g00003 931 Gene3D Ribonuclease Inhibitor 545 892 IPR032675 -
Gabi1123g00003 931 SUPERFAMILY L domain-like 494 891 - -
Gabi1123g00003 931 PANTHER DISEASE RESISTANCE PROTEIN RP 35 847 IPR044974 GO:0006952
Gabi1123g00003 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 428 IPR027417 -
Gabi1123g00003 931 PRINTS Disease resistance protein signature 363 377 - -
Gabi1123g00003 931 PRINTS Disease resistance protein signature 184 199 - -
Gabi1123g00003 931 PRINTS Disease resistance protein signature 264 278 - -
Gabi1123g00003 931 PRINTS Disease resistance protein signature 615 631 - -
Gabi1123g00003 931 FunFam Probable disease resistance protein At1g61300 148 315 - -
Gabi1123g00003 931 FunFam Probable disease resistance protein At1g63360 415 504 - -
Gabi1123g00003 931 Pfam Rx N-terminal domain 14 94 IPR041118 -
Gabi1123g00003 931 Gene3D - 326 414 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1123g00003 Gabi-Chr1123 101732 105315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1123g00003 185 374 WRKY Transcription Factor Family AT5G45050 27.749 6.69e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1123g00003 K13457 - tpra:123915389 1354.73