Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1122g00006 ATGGACGCCATTCGCGAGGCGAATCGGAAAGCCATTGAGGATGTTTTGGAGGCGAATCGACTGGCATGTGGCAAGCCTGATCGCCTTATCAACAGGCGCACTACCGTGGAGAAGCAAGTTGCAGGAATACAAAAGGTTTTAGTATGTTGCAGGGAGAGGATAGCTGGATCGACATCCAAAGACTTCGATACTTGCTTTCAGCAGGACAGTGATCTCGAGAAGTTTCGCGTGAACCACGAGGCAAGGAAAGTCAAGAGATCTGAGGTTAAGGGAAACAACAGTTCCATTTCCTGGAGGGACAGGAAGTTTAGAGGCAAAGGTAAAGGGAAGCAGCTTCAGGTCAAACAATTGTGCAACAAATTCAAGAGGTCTACTACTCTAGCAGGCCACCTTACTGGATCGTTGACTATCCCGAAATGTACAGGATGTGGAGAGGGTCATCTGGGACCGTGTGCTACCGGTCAGACTTTTTGTTTCCAGTGTGGCCAGGAGGGCCACTATGTTAGAGACTTTCCGTCGTCGACAGCGAGGGTTGTAGCGGTTCAGGCAGTTCCGTTACTGATGGTTCCCCTTCCACCTACTTCGACACCAGCAGTGCCACCTGCTCCTGGGCGTGTTTACTCCTTGGATCATACCATGGAGATTGAGGAATTAATGTTGGTGCCACCTCCATGGCTGGAACCACTATTATCAACCACATTCTTCTCTTTGTGCAAAGTACACAACAACGCACCCAGAAACGAATGCAACATGTTCTGCCTCGATTGCGGAGACCAAGCATTCTGTTTTTATTGCAGACAATCTTGGCATAAGGATCATCATGTAATTCAAATAAGGAGGTCTTCGTATCATGATGTTGTGAGGGTGGCAGAGATTCAGAAGGTTTTGGACATAAGTGGGGTTCAGACATATGTGATTAACAGTGCGAGAGTTCTTTTCCTGAATGAGAGGCCTCAGAATCAGCCTAGGACTAATAATGCAGTTAGTAGTGGTAAAAGCAACACCCATTTGTGTGAAATATGCAGAAGAAATCTCTTAGACCCTTTTCGTTTTTGTTCTTTGGGATGCAAGGTAGTAGGGATAAAGAAGAATGGGAATGCGAGCTTTGTCTTAAGCGCAAAGAAAGACGAAGAAATAGGGAGAATGGAGGAAGGAATGGCGAGAAGATTGCCATCAAAGGAAGAAGACGAAAAATTGCGTGAAGGAATCCACAAACAAGTATACCAAAGCACGCCTTGTCCTTGTCTTGGTCAATCTCAAGCACAAGCTTGCTCAAATTCAAGGAGAAGAAAGGGAATACCTCGCAGGGCACCTTTATGA 1320 0.4636 MDAIREANRKAIEDVLEANRLACGKPDRLINRRTTVEKQVAGIQKVLVCCRERIAGSTSKDFDTCFQQDSDLEKFRVNHEARKVKRSEVKGNNSSISWRDRKFRGKGKGKQLQVKQLCNKFKRSTTLAGHLTGSLTIPKCTGCGEGHLGPCATGQTFCFQCGQEGHYVRDFPSSTARVVAVQAVPLLMVPLPPTSTPAVPPAPGRVYSLDHTMEIEELMLVPPPWLEPLLSTTFFSLCKVHNNAPRNECNMFCLDCGDQAFCFYCRQSWHKDHHVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQNQPRTNNAVSSGKSNTHLCEICRRNLLDPFRFCSLGCKVVGIKKNGNASFVLSAKKDEEIGRMEEGMARRLPSKEEDEKLREGIHKQVYQSTPCPCLGQSQAQACSNSRRRKGIPRRAPL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1122g00006 439 Pfam PLATZ transcription factor 279 358 IPR006734 -
Gabi1122g00006 439 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 221 439 - -
Gabi1122g00006 439 SUPERFAMILY B-box zinc-binding domain 236 280 - -
Gabi1122g00006 439 ProSiteProfiles Zinc finger CCHC-type profile. 158 173 IPR001878 GO:0003676|GO:0008270
Gabi1122g00006 439 MobiDBLite consensus disorder prediction 418 439 - -
Gabi1122g00006 439 CDD Bbox2 237 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1122g00006 Gabi-Chr1122 133683 144366 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Gabi1122g00006 PLATZ 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1122g00006 - - gmx:100787414 377.867