Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1122g00004 ATGGAATTTTCCAATCGCAGGTTGCTCCTAGTGAACGAGGATGTACCCATCACCACATCCATACCCCCTCTTCCTCACATCCACGGCACCACCACCAACAACAACTCATCTTCACCACCGGAATCAATGACGTCATCGTCATCAATGTTTGGAAGGCCTTTGCCACTGCCACTACGTCCATTTTTCACTTCAAACTTAGCCTTCGCCTTCCTCATCCTCTTCGTTGCGCTCTTCTTCATTGGCTTCATCTTTTTGTACATTCGTCAATTCTCCGACACGGATTCATCATCATCCTCCTCCTCCTCCTCCCGCCGCCGCCGCCGCCATCTTTCACACCAGGGTGTGGACCCCACCTCCGCGAAGTCTCTACCAGTATTTTCGTACAACGGAGATGCGAAGCAAATGGATTGCGCGATATGTCTGGACGAGTTCCGAGTCGGTGACTCGGTGAAGATGATTACTTACTGCAAGCACGTGTTTCACAAGGAATGTATAGACACGTGGCTCGCTGCGCACGTGACGTGTCCCGTTTGCCGGTGCACCAAGTTCGCGGATGAGGATGGAGAAAGATCAACGGCTGAGAATGGAGAAGATGTTAGAGAGGTGGGGTCTGAGTCACAGTCATAG 627 0.5152 MEFSNRRLLLVNEDVPITTSIPPLPHIHGTTTNNNSSSPPESMTSSSSMFGRPLPLPLRPFFTSNLAFAFLILFVALFFIGFIFLYIRQFSDTDSSSSSSSSSRRRRRHLSHQGVDPTSAKSLPVFSYNGDAKQMDCAICLDEFRVGDSVKMITYCKHVFHKECIDTWLAAHVTCPVCRCTKFADEDGERSTAENGEDVREVGSESQS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1122g00004 208 CDD RING-H2_EL5-like 136 179 - -
Gabi1122g00004 208 Pfam Ring finger domain 136 179 IPR001841 -
Gabi1122g00004 208 MobiDBLite consensus disorder prediction 24 46 - -
Gabi1122g00004 208 MobiDBLite consensus disorder prediction 21 46 - -
Gabi1122g00004 208 SUPERFAMILY RING/U-box 131 183 - -
Gabi1122g00004 208 SMART ring_2 137 178 IPR001841 -
Gabi1122g00004 208 MobiDBLite consensus disorder prediction 187 201 - -
Gabi1122g00004 208 MobiDBLite consensus disorder prediction 92 118 - -
Gabi1122g00004 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 183 IPR013083 -
Gabi1122g00004 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 39 190 - -
Gabi1122g00004 208 MobiDBLite consensus disorder prediction 187 208 - -
Gabi1122g00004 208 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1122g00004 Gabi-Chr1122 96400 97026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1122g00004 64 187 C3H Transcription Factor Family AT2G27940 43.056 1.49e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1122g00004 - K10664 mtr:25492360 174.096