Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1122g00003 ATGGCTATTGCTGGTCTGCATAGCGTGTCTGTGCTCGACTCCTCTTTCTTGAGGGACTCCCATTCCCAGTCATCCAGGAGGGGGGGAGATGGAAGAAGGCGAAGCACCCGGTCATCTTCACTCTTGCGAATGTGGCGAGAGATTGAGGATGAACATGTGGAGAGTCAAGTTCAAGGAAGACCTGGTGAAGTTCTACTTGAACAAAGGAGTGATGGGTTAATTGTTGACCTCTCACAGGAAGATACGCTGGATAGCCATGGGAGAGGGCAGGGGCATATGGTAGAAGATGCAGTTTTGGGTGGGAATGAGTCTGAAACTTGGTCACAGTCACCGAGTCAGAATGAATTCCATGATGAACATGAAGATTTAAACAATTCTAGCTGTGAAAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGAAAATTTTCAGGGAATGGATGAATAATGGTGCTAGGGATCATGGATCAAACATTTCCCGAAGAAATAACAGTTCAAGGAGAGAATGGCTTGGAGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAATGTTTCTTCTGGGGAAAGTAGGGAAGAACCATCTGCTGAAATAGATACACAAATTGAACGTGTACGTGATGGATTAGTTGTCAATCAGAGTGAGGGCCAGACTGAGCATACACGGAGGGGTATCCGAAAATTATGTGGCCGTCAGGTTATGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGACAAAGAGAAATTCAGGAGTTGTTGGACCATCGGGCTGTATCTCATTTCCCCCATCGAAATCGCATTCAGGCATTGCTTAGAGGAAGGTTCTTGAGAAATGATAGATCAGTTGATAATAACAGGCCCACTTCTGTTGCAGAAGGTGAATTGGGTTTATTGAGGCAAAGACAAACTGTATCAGGTCTAAGGGAAGGATTCTTCTCTAAAAGGGACAATACTGGTTGCATTCAAGCAACCAGTAAGCTATCTGATTCCTCATCTAACATTGATATTGATTTTAATATGAATGAACAAAATGGAGCAAGCAGTTCACGTATGGTCCCAAGTGTACATTCTGAACAGACTGAACCTAACAACAGAGGAAGTAATGGACTTGGGATGTCAGGCGGCCAGAACTGTTTACAAGGAACATGTGAGAATTTAGATTGGCAAGACTCTACTGCTCATGCAGATGGAGATCGGTTGCAGTATTTGCAAACTGAATCAGTCGTCTTGCAATCATCATTCAATTTTAGTGTTGAAAGAAGGGATGGTGCTGAGCAAAATGTTGATGTGATGCCTCCCGAAGATACTGCTGATGAACTTTCCCAACAAAGCTTGCGAATTGAAGATTCAGAGCATAGTAATTTTCAGGAACTCAGCAGGGTACATAATGAGCAATCCCAACTGGGTGATGTAAGTCATGGTGAAAACAATTCATCAAATCATGACAATTGTATGGAGGGAACTATTGGTGGTGATGTGAATTGGAATGAATCTGGTGCTCTGGAAGAACAGCTGGAAGACGATATTGGAAATGAAGGAAGCGACTGGCATCGGAGTAACACGGAATGGAGAAATAGCACTGTGGAAAGTGTGGATGATAATCTGCTCAGTAATACAGCAAATGAGTGGCCTGAAAACAGTTTGGGAAATGAGGATGGAGAAAACTCTCATGTGCAAGAAGCTCCTGAGGTGTGGCAAGAAGATCGTGGCTTCCATGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCCAATCATGCAAGTGCTCCAGTTGATAGAGTTCATGGATTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAGTAGGAGAAGTGTCTCAAACCTCCTTCACAGCAGTTTCCGTGATAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACACTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCAGCCTCGGCAGAACAGGACCTTGAGCAGCAGAATAGGGATCAGCTTGTTGGTCAGGAGGGTACTGTTAATAGTCCACTTGACCTGCCCTCTTTACCTATGCCTCCTCCTCTGCCTATTTGGGATCAGCACTCTCATCGTGACAACTGGCCACAGAATGACATAAATAATCACCGTCTTGGAATTGATTGGGAGATTATTAATGACTTGAGAATCGACATGGCTAGATTACAGCAAAGGATGAATAATATGCAGAGAACGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTGTCTGCAGCCCTAAATCGCTCTGCTGATTCATCAGGAATACATGATTGCGAGTCACCAGATGATAAGTCTAAATGGGAATGTGTGAGAAAAGGACTGTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACTTGTGTACATGTTCAAAATGTGCCGATGAGTTGCTCGAAAGTAGAAGGAAGTGCCCAATGTGTCAAGCGCCTGTGGTGGAGGTGATACGTGCTTATTGCATACTATGA 2580 0.4411 MAIAGLHSVSVLDSSFLRDSHSQSSRRGGDGRRRSTRSSSLLRMWREIEDEHVESQVQGRPGEVLLEQRSDGLIVDLSQEDTLDSHGRGQGHMVEDAVLGGNESETWSQSPSQNEFHDEHEDLNNSSCENSSDLGEVERERVRKIFREWMNNGARDHGSNISRRNNSSRREWLGETEQERVRIIREWVQMSSQQRNVSSGESREEPSAEIDTQIERVRDGLVVNQSEGQTEHTRRGIRKLCGRQVMLDMLKKAERERQREIQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSVDNNRPTSVAEGELGLLRQRQTVSGLREGFFSKRDNTGCIQATSKLSDSSSNIDIDFNMNEQNGASSSRMVPSVHSEQTEPNNRGSNGLGMSGGQNCLQGTCENLDWQDSTAHADGDRLQYLQTESVVLQSSFNFSVERRDGAEQNVDVMPPEDTADELSQQSLRIEDSEHSNFQELSRVHNEQSQLGDVSHGENNSSNHDNCMEGTIGGDVNWNESGALEEQLEDDIGNEGSDWHRSNTEWRNSTVESVDDNLLSNTANEWPENSLGNEDGENSHVQEAPEVWQEDRGFHEAVENWLGGPSNHASAPVDRVHGFYFPDDDNVYSVELRELLSRRSVSNLLHSSFRDSLDQLIQSYVERQGHAHTEWELQETTPSSASAEQDLEQQNRDQLVGQEGTVNSPLDLPSLPMPPPLPIWDQHSHRDNWPQNDINNHRLGIDWEIINDLRIDMARLQQRMNNMQRTLEACMDMQLELQRSIRQEVSAALNRSADSSGIHDCESPDDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCADELLESRRKCPMCQAPVVEVIRAYCIL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 192 217 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 202 216 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 102 136 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 660 679 - -
Gabi1122g00003 859 Coils Coil 735 762 - -
Gabi1122g00003 859 ProSiteProfiles Zinc finger RING-type profile. 807 846 IPR001841 -
Gabi1122g00003 859 SUPERFAMILY RING/U-box 806 852 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 153 174 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 352 385 - -
Gabi1122g00003 859 Coils Coil 243 270 - -
Gabi1122g00003 859 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 859 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 23 37 - -
Gabi1122g00003 859 Pfam Zinc finger, C3HC4 type (RING finger) 804 851 - -
Gabi1122g00003 859 MobiDBLite consensus disorder prediction 17 39 - -
Gabi1122g00003 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 793 857 IPR013083 -
Gabi1122g00003 859 CDD mRING-HC-C3HC5_NEU1 807 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1122g00003 Gabi-Chr1122 89079 94526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1122g00003 807 853 C3H Transcription Factor Family AT3G06140 42.553 2.24e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1122g00003 - - gmx:100801329 1311.98