Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi111g00004 ATGGCATTGTTCCGCAAGTTCTTTTATAAGAAGCCCCCTGAGGGGCTTCTAGAAATCGCTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGAGGAAAATGAATATAAAGTGTATATGGGAGGGATAATTGGGCAACTTCGTGATCATTTTCCCGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGATAACCAAAGTGACATTTCAAACATTTTGTGTGACTATGATATGACTGTGATGGACTATCCTCGACAGTATGAAGGTTGCCCATTAATTACCATGGAGATGATTCACCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTTGGGCAACAGAATGTTGTTTTGATGCATTGCGAACGAGGTGGGTGGCCAGTTTTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGCTGTTTACTGGGGAGCAGAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTTTGCAGTTGATGTCACCATTGAATCCACTACCTTCACAATTGAGGTATCTTCAGTATATATCAAGGAGAAATGTTGGTTCGGAATGGCCTCCTCTAGACAGGGCACTTACACTGGACTGCGTAATTATAAGACTCATTCCTAATATGGATGGAGAGGGTGGTTGCCGTCCTATATTTAGGATATATGGACAGGACCCGTTTATTCCTGCTGACCGGTCTCCCAAACTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGGCATTACAAGCAGGTGGTACTTGAGTCCTTTTACTTTAACATAATATGCTTTTTACAGTTCAAGCTAGATCATGATTCAAGACAATGATTGTCTCCCTTTTTTTTTGATTTATTGTTTTCCCCATTTCCCTTAATCTATTTATTTTTTGTTTCATACTTGTTGCAGGCTGATTGTGAACTGGTTAAGATTGACATCCATTGTCATGTTCAAGGTGATGTTGTTCTTGAATGCATTAGTCTAGACAGTGATTTGGAACGTGAACAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATATTATGGAATGCTAAAGATCACTTCCCTAAAAATTTTAGAGTAGAGGTCCTTTTCTCAGATATGGAAGCCTCGTCTTCTGTTATTTCAATTGATTTGCCTCGTCTTGAGGAGAAAGAAGGCCTACCAGTTGAAGCATTTGCTAAAGTTAAAGAAATTTTCAGCCATGTTGATTGGCTAGATTCAAAGACAGAGGTTGCAAATGTGCTCCAACAGATCACAGTATCAAATATCCTTCTGGAAAAATTGGACAGTGGGGTTTCTGCTGGAACAAGCAGCTTGCTAAAGGAGTCATTGTCTGGAAGATTGAAATATGATTCAAAGACACAAAATGATATGAAGAGTCCAACTTCTGCAGTTCAGGGGGGTGTTTCCTCATTCGAATCATTTGGGGATTCTTCTACAGAAAAGAAGCTAGAACCATTAGAATCAAAGGCATTGCCAGAAAATAACATCAAGACTCCTACACATTTAGGTCAGGGGAACCAACCAATTTCCTCAATTGGACTCTCAACAGATTCAGATTCTACTAAAAAGGAGACTGAATCATTAGAATCGAAACAGTCCGTGGAAGATGATACTAAGTTTCCTACGTCCATGGCTCAAGAGAAACAATCCATCCCCTTAATTGAACCATCCATGGATGCAAATTCAATGAAGACAAAGATTGGACCATTAGAATCCAAGGAAAAGGATACTGAATCATTAGAATCAAAGGCACTGTTGGAAAATAACACCATGGGTCCTGCATCCGTAGCTCAGGATAAACAAGCTGTTCTCTTAATTGAACCATCCAATGATGCAAGTTCAATGAAAAAGAAGATTGGACTGTTAGAATCTAAGGAAAAGGAAGTTGAATCATTAAATTCAGAGGCATTGCTGGAAAATGATAGAAGATTTAAATTTGAACCAAAGACACTACCAGAATTTGATGTAAAGAGTCCGACTTCTGCAGCTCAAGGGAAACTTTGTTTGTCCTTATTTGAATCATCCGGGGAGGCTCCTATGGAACAGAAGATTGAATCATTAGAATCAAAGGCACTTCCCCAAAAAAACATCGAGACTCTTGCTCCCATGCAGGAGAAACAACCTATTCCCTCATTTGGACTCTCAACAGATTCAAACTCTACTAAAATGCAGATTGAATCATTAGAGTCAAAGACATCGGTGGATGATACTAAGTTTCCTACATCTATGGTTCAGGAGAAACAATCTATTCCCTTACTTGAACCATCCACGTATGCAAATTCAATGAAAAAGAAGATTGGCCAATCAGAATCAACTACACTGTCAGAAAATGATATCAATAGTCTCACATCCACAGTTCAGAGGAAACAATATAGTCCCTTACTTGAGCCGTCCATTGATGCAAACTCAATTCGAAAGAAGATTGAACCTCAAGAATTGCAAGTTTCTCTTCAGCTTCCCACCCAATCTAAAATAATTTCTCCACGGGTACGTCAACCTATTCGATCTGCTTCAGCTTCTTATTATAACCCCTTGCAAGGTTCACCTGTAGCTGTCTCAAGATATCATAGTACACCATCAGCTCTTGGAATAACAACTGTGTTGCAGGATCATGCACCAATGGATATCAAAGAAGTCACTCATGAAGTTACAATAACCCCCAGTTCTTCTACTTTGCCTCCTTCAGAATCAAAGGTGCCAAAATCTGTAGAGCCTAGTTCTACAAGTGTTCCTCCAGCATCATCACCAGCATTGGTTCCATCTTCGCCATTAAAATCTTCAGTTAATGCTCATGTTTCCATGGAGAAGACTTTTGGACCCTTTGCTCCTGCTCTTGTTGCTCCTTCGCCTCCACTTCCACCTCCTCAACATGAGCCTATTTCAACATTGATGCAATCTATTGATACTAATACAATGCATGATAAAGGTCAGAAATCATTGGTTACTCCCCTTCCTTCACCCCTTCCTTCTGAGGCTATCGAGAGCTGTCTTTCAATGCCTGCCCCTCCAACTTCAGCTCTTTGTTCTCCATCCTCTGCCACGAATAGCTCATCTTTATCCCATCCACCACCTTCTTCCCTTCCTAGAACATCTCTCTCCACCATCAAAGATTCATTTAAAGGTCCTCCTCCCCCACCTCCACCTCCATCTTCAACTGGACATACTTCATCATATTCAATACCTCCTCCCCCTCCTCCGCTTCCATCTTCAACTGGACAGACTTCATCATCTTCAATTCCTCCTCCTCCTCCACCATCCGAATTTCCTTCTTCAGCTTTCCTCACTTCCTCTTCTCCGTTGAGTTTGAACAAGTCTGCTGCTATGCCTGGCCCTCCTCCTCCTCCTCCGCCTCCTAAGCATTCTGGCACCGCACCTGGTTCTACACCTACACCATTAGTGCCGCCACCACCCCCTCCTCCTGCTTCTGCAACCCAAAATTCTTTGTCTAAGAGCTCTGGAAATGTTCCACCTGTACCTCCACCTCCTTCCCCTTCTGCCAATGGGTTATCAAAACCTGGCACCACCTCACAGCAGTCTCATGTTGGTGCTGGAAATGGAAATGTGCCTCCAATTCCTGGACCACCTTCTGGTGTTCCATTTGGTGCAAAGGGACGTGGTCTGTTGCGAACTAATCCAAAAAGTCAGTCTCAGACTAAAAGGAGCAATTTGAAACCTTACCATTGGTTGAAATTAACAAGGGCCATGCATGGAAGTTTATGGGCTGAGACACAAAAACTTGATGAAGCTTCTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAGAGTCTTTTCTCTGCAGCTACTCCAAATTCTGATCATGGAATAGGAGGAAAATCAAACCGCCGCGCCTCAGGGCAAAAAGCTGACAAAGTTCAATTGATTGAGCTCAGGCGGGCGTATAACTGTGAGATTATGCTTACAAAAGTCAAAATCCCTTTGCCTGATTTAATGAGCTCTGTGCTTGCATTGGACGATTCAGTATTATTCGTTGATCAAGTTGAGAACCTCATAAAGTTCTGTCCAACCAAAGAAGAGATAGAACTTCTCAAGAACTATAATGGAGATAAGGAAAATTTGGGAAGGTGTGAACAGTTCTTCTTAGAATTAATGAAAGTGCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCTGCTCCCAGGTTTCAGAGCTTAGAAGGGACTTGAATATTGTAAATTCTGCATCCGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCTGCTATTGGGTTCCGATTGGATAGTCTTCTTAAACTCACAGATACACGAGCCAGAAACACCAAGATGACTCTCATGCACTATCTTTGTAAGGTGCTTGCTGAAAAGCTTCCAGAACTTTTAGATTTCCCCAAAGACCTAGTGAGTTTGGAGGCTTCAACCAAGATACAATTGAAATATTTGGCGGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGGCCTGTGTCAGAAAGCTTCTGTAAGATTCTGAAGGAATTTCTTAGTAAAGCTGAAGCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCTTTGGCTCAATATTTTGGAGAAGATCCTGCACGTTGCCCATTTGAACAAGTTGTATCTACTCTACTCAACTTTGTGAGGATGTTCGTCCGAGCACATGAAGAAAATTGCAAGCAGCTTGAATTAGAAAAAAAGAAAGCAGAGAAGGAAGCTGAAAATGAGAAGTTGAAGCTAGCTGCTAAAAAGAAATCTGAACCAATGATACGGACCACCATCAAGAGTGGTAATATTAAATGA 4980 0.4122 MALFRKFFYKKPPEGLLEIAERVYVFDYCFTTDVMEENEYKVYMGGIIGQLRDHFPDASFMVFNMREGDNQSDISNILCDYDMTVMDYPRQYEGCPLITMEMIHHFLRSGENWLQLGQQNVVLMHCERGGWPVLAFMLAALLIYRKLFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMDGEGGCRPIFRIYGQDPFIPADRSPKLLFSTPKRSKLVRHYKQVVLESFYFNIICFLQFKLDHDSRQXLSPFFFDLLFSPFPLIYLFFVSYLLQADCELVKIDIHCHVQGDVVLECISLDSDLEREQMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDHFPKNFRVEVLFSDMEASSSVISIDLPRLEEKEGLPVEAFAKVKEIFSHVDWLDSKTEVANVLQQITVSNILLEKLDSGVSAGTSSLLKESLSGRLKYDSKTQNDMKSPTSAVQGGVSSFESFGDSSTEKKLEPLESKALPENNIKTPTHLGQGNQPISSIGLSTDSDSTKKETESLESKQSVEDDTKFPTSMAQEKQSIPLIEPSMDANSMKTKIGPLESKEKDTESLESKALLENNTMGPASVAQDKQAVLLIEPSNDASSMKKKIGLLESKEKEVESLNSEALLENDRRFKFEPKTLPEFDVKSPTSAAQGKLCLSLFESSGEAPMEQKIESLESKALPQKNIETLAPMQEKQPIPSFGLSTDSNSTKMQIESLESKTSVDDTKFPTSMVQEKQSIPLLEPSTYANSMKKKIGQSESTTLSENDINSLTSTVQRKQYSPLLEPSIDANSIRKKIEPQELQVSLQLPTQSKIISPRVRQPIRSASASYYNPLQGSPVAVSRYHSTPSALGITTVLQDHAPMDIKEVTHEVTITPSSSTLPPSESKVPKSVEPSSTSVPPASSPALVPSSPLKSSVNAHVSMEKTFGPFAPALVAPSPPLPPPQHEPISTLMQSIDTNTMHDKGQKSLVTPLPSPLPSEAIESCLSMPAPPTSALCSPSSATNSSSLSHPPPSSLPRTSLSTIKDSFKGPPPPPPPPSSTGHTSSYSIPPPPPPLPSSTGQTSSSSIPPPPPPSEFPSSAFLTSSSPLSLNKSAAMPGPPPPPPPPKHSGTAPGSTPTPLVPPPPPPPASATQNSLSKSSGNVPPVPPPPSPSANGLSKPGTTSQQSHVGAGNGNVPPIPGPPSGVPFGAKGRGLLRTNPKSQSQTKRSNLKPYHWLKLTRAMHGSLWAETQKLDEASRAPEFDMSELESLFSAATPNSDHGIGGKSNRRASGQKADKVQLIELRRAYNCEIMLTKVKIPLPDLMSSVLALDDSVLFVDQVENLIKFCPTKEEIELLKNYNGDKENLGRCEQFFLELMKVPRVESKLRVFSFKMQFCSQVSELRRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNTKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSESFCKILKEFLSKAEAEVRSLAQLYANVGRNADALAQYFGEDPARCPFEQVVSTLLNFVRMFVRAHEENCKQLELEKKKAEKEAENEKLKLAAKKKSEPMIRTTIKSGNIK 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi111g00004 1659 Gene3D - 303 392 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 967 1247 - -
Gabi111g00004 1659 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 187 IPR029021 -
Gabi111g00004 1659 Pfam C2 domain of PTEN tumour-suppressor protein 200 387 IPR014020 -
Gabi111g00004 1659 Coils Coil 1611 1645 - -
Gabi111g00004 1659 Gene3D - 205 276 - -
Gabi111g00004 1659 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 310 389 IPR035892 -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 473 559 - -
Gabi111g00004 1659 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Gabi111g00004 1659 PANTHER FORMIN-J 1084 1645 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 580 617 - -
Gabi111g00004 1659 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1236 1636 IPR015425 -
Gabi111g00004 1659 Pfam Formin Homology 2 Domain 1238 1610 IPR015425 -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 967 981 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1062 1093 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1025 1060 - -
Gabi111g00004 1659 Gene3D Formin, FH2 domain 1255 1648 IPR042201 -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1191 1207 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1232 1246 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1129 1166 - -
Gabi111g00004 1659 ProSiteProfiles C2 tensin-type domain profile. 199 389 IPR014020 -
Gabi111g00004 1659 SMART PTEN_C2_2 197 388 IPR014020 -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 591 605 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 477 499 - -
Gabi111g00004 1659 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1158 1630 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1286 1300 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1113 1127 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 516 541 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 1283 1307 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 542 559 - -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 982 1000 - -
Gabi111g00004 1659 Coils Coil 638 665 - -
Gabi111g00004 1659 SMART it6_source 1000 1657 IPR015425 -
Gabi111g00004 1659 MobiDBLite consensus disorder prediction 905 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi111g00004 Gabi-Chr111 25552 44102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi111g00004 823 947 FH2 protein (formin) Gene Family AT2G25050 40.146 8.89e-14 75.1