Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi111g00003 ATGGATGAAAAGGTGGAAACACTTGAAGCGGAGTTACAACTTGTGAGAGAGCATAATAATACTCTAAGACTGATGCTTGAACTTCTGAGCAGCAAATGTACAAAGCTTTGGTCCCATCTTCAAGAGATCAACAAGGTAGAACAGATTGGCATCAGTTCAAATCAAATTGGGTCAGCATCTAAACTTTATACAAACAAGAAAGCAAGACTAGAGTTTACCACAGCAAAAAAACCATTAGAAATCTTTGTCAGAACCGACCCCAATGATGATAGTATGATAATAAAAGATGGTTATCAGTGGAGAAAGTATGGACAGAAGGTTACTAAAGACAATGCTTCACCTCGAGCTTACTTCAGGTGCTCCATGGCTCCCAGTTGCCCAGCCAAAAAAAAGGTGCAAAGATGCATACATGATAGGTCAATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTATCATTCATAAGTCATTAAGACCATCTTCATCCACACTCACAGGCACTTCAATGACTAATAATTCACCTCTGACAATCATACCAAACGGCAAAGATGCCATGAACATTGACTTTGCTCCTTCTGGTTGGGCTCAAACAGATATGAGACTTTGTGAGGATGTCATGCAACAACATGACCATGGCAGCAACATCAAAATTGAAGAATATGTAAGTTCTCTAATTAAAGATCCTGACTTCACAGTAGCATTAGCTGAAGCAGTTGCCCGCACCATCACTAGTCAGCGTAAGCAACAAGGTATAAACCTCAACATGGATGTTCCAGAAGAATGA 789 0.4018 MDEKVETLEAELQLVREHNNTLRLMLELLSSKCTKLWSHLQEINKVEQIGISSNQIGSASKLYTNKKARLEFTTAKKPLEIFVRTDPNDDSMIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQRCIHDRSILVATYDGEHNHGIIHKSLRPSSSTLTGTSMTNNSPLTIIPNGKDAMNIDFAPSGWAQTDMRLCEDVMQQHDHGSNIKIEEYVSSLIKDPDFTVALAEAVARTITSQRKQQGINLNMDVPEE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi111g00003 262 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 247 IPR044810 GO:0003700
Gabi111g00003 262 Gene3D WRKY domain 80 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi111g00003 262 Coils Coil 5 25 - -
Gabi111g00003 262 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi111g00003 262 SUPERFAMILY WRKY DNA-binding domain 91 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi111g00003 262 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi111g00003 262 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi111g00003 Gabi-Chr111 22827 25377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi111g00003 2 247 WRKY Transcription Factor Family AT1G80840 34.164 2.06e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi111g00003 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi111g00003 - - ccaj:109791737 384.8