Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1119g00004 TATATTAAACTCTTTAATACATCTAGTCCTTCTATATTGCTTCGTTTCATATTATTATTACTATTTGTTTCGTGCAAAACAAAGGCTGTGTTGAAATTGCCACCAAATGTTTCAGTCCCAGCAGTGTTAGTGTTTGGAGATTCGATCATGGATACGGGCAACAACAACAACAACTTGCTAACAACTGCTCGGTGCAACTTCTCACCATACGGTCAAGATTTTGAAGGAGGGATCCCAACTGGTCGATTTGGAAACGGAAAGGTTCCATCAGACCTTATAGTTGAAGAATTAGGCATTAAGGAGCTTCTACCAGCATATTTGGATCCAAATCTTCAATCTAGTGATTTGGCCACTGGTGTGTGCTTTGCATCAGGTGGGGCCGGATACGATCCTTTGACATCACAATTAGCGTCGGCTATACCTTTATCTGGTCAACTAGACATGTTCAAAGAATACATAGGGAAGTTAAAAGGACTCGTTGGAGAGGACAGAACAAACTTCATCTTAGCCAACAGTATTTATTTTGTGGTATTAGGCAGCAATGATATTTCCAACAGTTACTTCTTGTCTCGTGTTAGACAACTGCAATACGATGTTCCTGCTTACACTGACCTTATGGTCAGCTCAGCTTCTAATTTCGTGAAGGAAATTTATCAATTAGGGGCACGAAGGATTGGAGTATTCAGTGCTCCATCAATTGGGTGTGTGCCATTTCAGAGAACGGCGGCTGGAGGAATAGAAAGAAAATGCATAGCAAAGTACAACGACGCAATAGAGTTATTTAACAGCAAATTGTCAAAGGAGCTGGGTTCTCTTAACCAAAATTTTCCCAATAGCAGGATTGTTTACATGGATGTTTTCAACCCTCTCCTTGATATCATCGTAAACTACCAAAAATATGGCTATAAAGTCGGAAATAGAGGGTGCTGTGGCACGGGCACAGTAGAGGTAGTGTTCTTATGCCATTTGGTTCCCACGTGTCCAAATGTTTCGGAGTATGTGTTTTGGGACGGTTTTCATCCTACAGAAAGCGTTTACAAAAAGCTCATACCTCCTCTTCTTCGAAAATATCTATACTATTTCATGGTACAACAGTGTAGGGACATTGAGGATGTCTGTATCGTGAGCAAGGCTAAGAGAGCCAAAGTTGCGGAGGTTAAGGGAACTGAGTTTACTAGAGCAGAATTAGAGAGTTCCCAATACAACTCAAAAGCAAAGAACTTAATAGTTAATGCACTTGGTAAGGATGAATACTACCGAGTATCTTCATGTAAGACCGCACGTGAGATGTGGCTTATCTTAGAAACAACCCATGAAGGTACTACTGAAGTAAAACGTTCTAGACAAAATGTGTTATCTAGAGAGTTTGAGATCTTTGAGATGTATGAGCGCGAGTCTATATTTGACATGCAAAAGTGTTTCATGCATATAGTTACATCACTGAATGCTTTAAATATTTTTCATGATGATGAACTGGATTACGAGTTGGAGTTAAACAGAAGGGTTAACCGTGAGTTTAACAAGAAAATTTCAAAGAGTATAACTCTAAAAGTTTCTTCTTCCAAATCCAAGCAAAGTAAGAAAATTACCGATACTTCTTCAAGTGAATCAAGCACCGGTGAAGACGATGAAATGACAATGTTCGTGAAAAAGTTTAACATGTCGTTCACCAAGTTCTTCAACAAGAAGTTCAACAAAAGGAGAAGAAGGACCGACAACCCAAGTAGAAAAGAAAGCAACTCAAAAAATGCTTGTTTTGAGTGTGGAAAGGAAGGTCACTTCCAAAAGGATTGCCCGAACAAAAAGAATAAATATGACAATGGAAAGTTCAAGAAAGGTAAGAGCAAAAAGAAGAGAGCTTACATGGCATTTTCAGATGACACTTCAAGTACTACAAGCTCTTCATCAAGTGAACAAGCTAACATTTGCTTCATGACACAAATTGAAAAAGATCAAATTGAGGTACATTCTAGCCACTCTTCTAGTTCTGTGTGGGATTCCGATTAG 2007 0.3901 YIKLFNTSSPSILLRFILLLLFVSCKTKAVLKLPPNVSVPAVLVFGDSIMDTGNNNNNLLTTARCNFSPYGQDFEGGIPTGRFGNGKVPSDLIVEELGIKELLPAYLDPNLQSSDLATGVCFASGGAGYDPLTSQLASAIPLSGQLDMFKEYIGKLKGLVGEDRTNFILANSIYFVVLGSNDISNSYFLSRVRQLQYDVPAYTDLMVSSASNFVKEIYQLGARRIGVFSAPSIGCVPFQRTAAGGIERKCIAKYNDAIELFNSKLSKELGSLNQNFPNSRIVYMDVFNPLLDIIVNYQKYGYKVGNRGCCGTGTVEVVFLCHLVPTCPNVSEYVFWDGFHPTESVYKKLIPPLLRKYLYYFMVQQCRDIEDVCIVSKAKRAKVAEVKGTEFTRAELESSQYNSKAKNLIVNALGKDEYYRVSSCKTAREMWLILETTHEGTTEVKRSRQNVLSREFEIFEMYERESIFDMQKCFMHIVTSLNALNIFHDDELDYELELNRRVNREFNKKISKSITLKVSSSKSKQSKKITDTSSSESSTGEDDEMTMFVKKFNMSFTKFFNKKFNKRRRRTDNPSRKESNSKNACFECGKEGHFQKDCPNKKNKYDNGKFKKGKSKKKRAYMAFSDDTSSTTSSSSSEQANICFMTQIEKDQIEVHSSHSSSSVWDSD 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1119g00004 668 Pfam Zinc knuckle 584 600 IPR001878 GO:0003676|GO:0008270
Gabi1119g00004 668 MobiDBLite consensus disorder prediction 624 638 - -
Gabi1119g00004 668 MobiDBLite consensus disorder prediction 521 541 - -
Gabi1119g00004 668 FunFam GDSL esterase/lipase APG 31 358 - -
Gabi1119g00004 668 SUPERFAMILY Retrovirus zinc finger-like domains 567 607 IPR036875 GO:0003676|GO:0008270
Gabi1119g00004 668 CDD SGNH_plant_lipase_like 40 347 IPR035669 -
Gabi1119g00004 668 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 42 53 IPR008265 GO:0006629|GO:0016298
Gabi1119g00004 668 MobiDBLite consensus disorder prediction 599 638 - -
Gabi1119g00004 668 Gene3D - 575 607 - -
Gabi1119g00004 668 SMART c2hcfinal6 584 600 IPR001878 GO:0003676|GO:0008270
Gabi1119g00004 668 Pfam gag-polypeptide of LTR copia-type 402 490 - -
Gabi1119g00004 668 ProSiteProfiles Zinc finger CCHC-type profile. 585 600 IPR001878 GO:0003676|GO:0008270
Gabi1119g00004 668 PANTHER GDSL ESTERASE/LIPASE EXL3 20 350 - -
Gabi1119g00004 668 Gene3D SGNH hydrolase 33 354 IPR036514 -
Gabi1119g00004 668 Pfam GDSL-like Lipase/Acylhydrolase 42 349 IPR001087 GO:0016788
Gabi1119g00004 668 SUPERFAMILY SGNH hydrolase 40 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1119g00004 Gabi-Chr1119 122588 160598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1119g00004 36 349 Pollen Coat Proteome AT1G75910 41.956 1.84e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1119g00004 - - gmx:100777186 558.91