Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1118g00006 ATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCGGCGCCGGCTTCCTCGTCGCTCAACGTCGTCGGATTAACGAGCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAATTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGATCGTACACGCGCATAACGGTTCCGGAAAAACTACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGGGTGACTTAGTCATGGATATGGGGACATATGAATTGGTTTGTGCAGAGTATTTAGGATCTGCAGTTGTAGAGCCAGCTTGGTTGAACTATTTCAGGGAATGGGGTCCAAAAACTGATTACAGTATAGATGATGAGTTGAAGAAGGTGGAGAAGTTGTTGCCTGGGAAGCTAAAATCTGCTTTTGAAAATTTTGTAAAGAGTTTACCAAAGGAAGTGCTGGGAGCGGAAGGACCCACAGGTCCAAAGGTGAAGAATAATTGGAGTGGTGATGAAGCATGA 738 0.4892 MAEPSTAETTSASDAHPPAPAPASSSLNVVGLTSDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLKGLYVEMKFQKPSKIQAVTLPMILNPPNRDLIVHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQGDLVMDMGTYELVCAEYLGSAVVEPAWLNYFREWGPKTDYSIDDELKKVEKLLPGKLKSAFENFVKSLPKEVLGAEGPTGPKVKNNWSGDEA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1118g00006 245 Pfam DEAD/DEAH box helicase 93 153 IPR011545 GO:0003676|GO:0005524
Gabi1118g00006 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 153 IPR027417 -
Gabi1118g00006 245 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 96 IPR014014 GO:0003724
Gabi1118g00006 245 Pfam Vacuolar protein sorting-associated protein 62 151 244 IPR009291 -
Gabi1118g00006 245 MobiDBLite consensus disorder prediction 1 62 - -
Gabi1118g00006 245 Gene3D - 46 179 IPR027417 -
Gabi1118g00006 245 PANTHER F1C9.34 PROTEIN 151 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1118g00006 Gabi-Chr1118 198632 199847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1118g00006 31 163 Eukaryotic Initiation Factors Gene Family AT1G72730 34.043 8.72e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1118g00006 K18655 - gmx:100778091 218.394