Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1109g00006 ATGAGTAACCCTTCAGATGAAAGGGAGCAGTGTCAGAAGAAGAGAAAATCTACCAGTTGTGAAGGCTCTACCTCGAGGACTTCAAGGAGAAGATTGTGCAGCAACAAAAACGAAGAAGAGAAGCACAAGGGAGTCTCCACCACACTGAAGCTTTACGACGACCCGTGGACGATCAAGAAGACACTGACTGATAGTGATCTTGGAATCTTGAGCAGACTCTTGTTGGCTGCAGATTTGGTAAAGAAACAGATTTTGCCTATGTTGGAAGTTGATCATGCAAGAGCCGCGGAAACTGATGAAGGAACCCCAGTTAGAGTTCGGGACATAGATACCAAATCCATGCACCAACTCGTTCTGAAGCGATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGATTTTGTTAGGAGAAGAGAGCTCAAGAAAGGGGATGAGATCGGATTCCACTGGGATCCATATAATTGCACTTTCAATTTCTGTGTTCTTAAACGGGCTATACCAGCGAACTAA 522 0.4444 MSNPSDEREQCQKKRKSTSCEGSTSRTSRRRLCSNKNEEEKHKGVSTTLKLYDDPWTIKKTLTDSDLGILSRLLLAADLVKKQILPMLEVDHARAAETDEGTPVRVRDIDTKSMHQLVLKRWSSSKSYVLIGKWNQDFVRRRELKKGDEIGFHWDPYNCTFNFCVLKRAIPAN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1109g00006 173 SUPERFAMILY DNA-binding pseudobarrel domain 53 167 IPR015300 -
Gabi1109g00006 173 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 19 168 - -
Gabi1109g00006 173 SMART B3_2 58 169 IPR003340 GO:0003677
Gabi1109g00006 173 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1109g00006 173 CDD B3_DNA 56 167 IPR003340 GO:0003677
Gabi1109g00006 173 MobiDBLite consensus disorder prediction 1 44 - -
Gabi1109g00006 173 Gene3D - 53 169 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1109g00006 Gabi-Chr1109 196991 197824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1109g00006 58 153 RAV Transcription Factor Family AT1G50680 33.010 4.29e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1109g00006 - - pvu:PHAVU_009G204600g 303.138