Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1109g00003 ATGAACTGTCTTCAGAATCTTCCTCGATCCTCTGCTTTGGCCTTACAAACAGTTGTTACGCGCCATCACAAGAACCCTCCTTTTTCTGCTCTTTCTTTGGGAATCATCAACAATTCTCGTCGAAATCGAAGTATGACACTTAAGTCTGCTTCTGGTTCTATACCTAGTGCAGAGACGAGTAGTGCCGATATGGAGGAGGAAAAGTCTGAGACATATAGTAGTAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTTATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTAAAGATGTTGACAAGCTGCGTAGAATCGGAGTGAAAACTATATTTTGCTTGCAGCAAAATTCAGACCTAGAATATTTCGGAGTTGATATCAATGCCATACGAGAATATGCCGAGACTTGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATATGATTTACGGATGCGGCTTCCAGCTGTAGTTAGAAAATTATACAAGGCAATAAATTCCAATGGAGGTGTGACATATGTTCATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCATATATGTTTTGGGTTCTGGGTTATAAACTTAATGATGGTCATACACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAACTTGATGCCATAAAAAGTGCAACGGCTGATATTCTTACAGGCCTCAGTAAAAAGCATGTCACTTTGTCATGGGAAAACAACAATTGCTCTACAGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTGCCCCTAGATTTTGATGACAGACGGGGTTTGTGGTTTCTCAAAAGGGAATTGCCTGAAGGACGCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAGGATGAGCTCTTAACCTCTCCCAACAAAGACGGCCATGTCAACAATTTTGTGCAAGTCATTGATGATCCCAACAGTGTTCGTGCCTCCCTTAGGGAGAGATTGACTGGTGATGATCCTGATCTCACAAAGGATGAACGTTTGAGAATAAAAGAGTTTTTTGAAGCTTGTCCTGATGAGGATCAATGA 1128 0.4229 MNCLQNLPRSSALALQTVVTRHHKNPPFSALSLGIINNSRRNRSMTLKSASGSIPSAETSSADMEEEKSETYSSNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPKDVDKLRRIGVKTIFCLQQNSDLEYFGVDINAIREYAETCNDIQHLRAEIRDFDAYDLRMRLPAVVRKLYKAINSNGGVTYVHCTAGLGRAPAVALAYMFWVLGYKLNDGHTLLQSKRSCFPKLDAIKSATADILTGLSKKHVTLSWENNNCSTVEISGLDIGWGQRVPLDFDDRRGLWFLKRELPEGRYEYKYIVDGEWTCNKDELLTSPNKDGHVNNFVQVIDDPNSVRASLRERLTGDDPDLTKDERLRIKEFFEACPDEDQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1109g00003 375 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 373 - -
Gabi1109g00003 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 248 338 - -
Gabi1109g00003 375 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
Gabi1109g00003 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 235 IPR029021 -
Gabi1109g00003 375 Gene3D Immunoglobulins 248 338 IPR013783 -
Gabi1109g00003 375 MobiDBLite consensus disorder prediction 46 60 - -
Gabi1109g00003 375 CDD E_set_AMPKbeta_like_N 253 333 - -
Gabi1109g00003 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 228 IPR000387 GO:0016311|GO:0016791
Gabi1109g00003 375 Pfam Glycogen recognition site of AMP-activated protein kinase 253 335 IPR032640 -
Gabi1109g00003 375 MobiDBLite consensus disorder prediction 46 74 - -
Gabi1109g00003 375 Gene3D Protein tyrosine phosphatase superfamily 86 366 IPR029021 -
Gabi1109g00003 375 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203
Gabi1109g00003 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 86 268 - -
Gabi1109g00003 375 SMART dsp_5 93 243 IPR020422 GO:0006470|GO:0008138
Gabi1109g00003 375 Pfam Dual specificity phosphatase, catalytic domain 136 231 IPR000340 GO:0008138|GO:0016311
Gabi1109g00003 375 SUPERFAMILY E set domains 252 333 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1109g00003 Gabi-Chr1109 65499 75686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1109g00003 92 374 Protein tyrosine phosphatase (PTP) family AT3G52180 68.905 7.28e-152 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1109g00003 - - gmx:100786287 661.373