Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1109g00001 ATGGGTGAGGGGCAAGAGAAGGACGCTCTTCCGAATAACAAGCCTTCCACTGAACATGACATTTCTGATGAGCTAGATCTGAAAATAAAGAAGTATCTCAGAGGAGAAGTTGCTAATTTGGAGGCTTTGAAGGATAAAAAGCTGAAGGGTCAACTTGCTGTTAGAGAAGAATTATATGGAAAATCTGCAAAAGCTGCTGCTAAGGCAGAGAAGTGGCTTATGCCTAGCGAGGGAGGTTATCTGGAGGCTGAAGGCATAGAGAAGACATGGAGAATCAAACAAGAGGCAATAGCTCGTGAAGTAGATATCTTAAGCTCAAGGAATCAATATGATATTATCTTACCAGCACTTGGTCCATACACTCTGGATTTTACTTCGAGCGGCCGGTATATGGCTGTTGGTGGTCGTAAGGGTCATCTGGGAATCGTGGACATGATAAATCTGAGCCTAATCAAAGAGTTTCAGGTAAGAGAAACCGTGCGCGATGTGGTCTTCCTGCATAATGAGCTCTTTTTTGCTGCAGCCCAGAAAAAGTATACTTACATCTATAATCGTGAAGGCACAGAGCTTCATTGCCTCAAGGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAACTTGGCCAGCTTCATTATCAGGATGTTACAACGGGTAGCATGGCTGGTAATTTTCGAACTGGCTTAGGACGTACAAACGTGATGCAAGTGAACCCTTTCAATGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACGGTTACTATGTGGAAGCCAACCAGTTCTTCTCCTCTTGTTAAGATGCTATGTCATCATGGGCCTGTCTCAGCGCTGGCATTTCACTCAAATGGCCACTTAATGGCCACTGCCGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTAGAGGCTGCTCTACAAATATTACCAGGCCATGCAAATACTTTGGATTTTAGTCAAAAAGGTTTGCTTGCTTGTGGTAATGGTTCATTTATTCAGGTTCTGAGTGATGTGTCTAGTACACAGAACTATTCTAAGTATATGACTCATTCCATGGTGAAAGGTTACCAGATAGGAAAATTAGTATTTCGACCATATGAAGATGTTCTAGGCATAGGGCATTCCATGGGCTGGTCTAGTATTCTTATTCCTGGAGCAGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCATTTGAAACATCTAAACAGAGGAGAGAAAAGGAAGTAAGGTCTCTTCTTGATAAGCTTCCACCTGAGACCATCATGCTGGATCCCAGCAAGATTGGTACGGTAAAACCAACAAGAAAAGAGAAACCAACAAACCAAGAGAGGGAGGCTGAGATGGAAGCTGCTGTTGAAGCTGTTAAGGGCACAAAAATGAAGAACAAAACAAAAGGAAGAAATAAGCCAGGTAAAAAGATACAGAAAACGCAAGACGCAATTGCTAGAGTGAAGAGGCCTTACTTAGAGCATAAAATTCAAGAGGAGGAAAACATATTGAGAAAGAAGCAGAACACTAGTGAGGGAGTTGAGCTACCAAAATCTTTACAGCGGTTTGCTCGTAAGAAAGCATCATCATGA 1614 0.4238 MGEGQEKDALPNNKPSTEHDISDELDLKIKKYLRGEVANLEALKDKKLKGQLAVREELYGKSAKAAAKAEKWLMPSEGGYLEAEGIEKTWRIKQEAIAREVDILSSRNQYDIILPALGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIKEFQVRETVRDVVFLHNELFFAAAQKKYTYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKLGQLHYQDVTTGSMAGNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSSSPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKLEAALQILPGHANTLDFSQKGLLACGNGSFIQVLSDVSSTQNYSKYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPTRKEKPTNQEREAEMEAAVEAVKGTKMKNKTKGRNKPGKKIQKTQDAIARVKRPYLEHKIQEEENILRKKQNTSEGVELPKSLQRFARKKASS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1109g00001 537 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Gabi1109g00001 537 FunFam U3 small nucleolar RNA-associated protein 7 108 391 - -
Gabi1109g00001 537 MobiDBLite consensus disorder prediction 434 457 - -
Gabi1109g00001 537 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1109g00001 537 Gene3D - 236 361 IPR015943 GO:0005515
Gabi1109g00001 537 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Gabi1109g00001 537 MobiDBLite consensus disorder prediction 483 519 - -
Gabi1109g00001 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Gabi1109g00001 537 Gene3D - 101 235 IPR015943 GO:0005515
Gabi1109g00001 537 SMART BING4CT_2 356 436 IPR012952 -
Gabi1109g00001 537 SUPERFAMILY WD40 repeat-like 118 384 IPR036322 GO:0005515
Gabi1109g00001 537 MobiDBLite consensus disorder prediction 441 457 - -
Gabi1109g00001 537 PANTHER WD-REPEAT PROTEIN BING4 12 532 IPR040315 -
Gabi1109g00001 537 MobiDBLite consensus disorder prediction 471 537 - -
Gabi1109g00001 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Gabi1109g00001 537 Pfam BING4CT (NUC141) domain 357 435 IPR012952 -
Gabi1109g00001 537 SMART WD40_4 147 184 IPR001680 GO:0005515
Gabi1109g00001 537 SMART WD40_4 105 144 IPR001680 GO:0005515
Gabi1109g00001 537 SMART WD40_4 269 308 IPR001680 GO:0005515
Gabi1109g00001 537 SMART WD40_4 227 266 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1109g00001 118 332 U-box Gene Family AT2G33340 24.779 5.41e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1109g00001 K14768 - gmx:100802940 936.791