Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1107g00004 ATGCAACCACCCACAAGAACCTCCCAACTCATTAATATACCTCCAACAAAAATGTATGCTTCAACTTCATTTACTTCACCACTCCTCCATGACCTTCTTAAGGACTTCCACTCAAGAAGGTTACTCTTTCATTCCCCACTTTACCAATCATCCAACTCAGCCAACCCCCCAGCTTCCACAAACACCCATGATTCAGCAGAATCATATCTTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCAGTCCTATTGTGCGCTCTTATTTGCTCACTTGGTTTGAACTCCATCATAAGGTGTGCGTTAAGGTGTTCAAATTTAGTTGTTAGTGACTCAGGGAACAACCCTCCAGCTAGAGTGGTCAACACAGGAATCAAGAAGAAAGCTCTCAAGACTTTCCCCACAGTAAGCTACTCTGCTGAACTAAACCTTCCAAGTTTGGATTCAGAGTGTGTGATATGCCTCTCAGAGTTCACTATTGGTGAAAGGGTGCGTATTTTGCCAAAGTGCAACCATGGTTTCCATGTTCGTTGCATTGACAAATGGCTAAGTTCACACTCTTCTTGCCCCAAGTGCAGACAGTGCCTTATTGAGACTTGTCAAAAGATTGTTGGGTGCAGCCAAGCTAGTACATCACAACCACCTGTGTTGCCAGTGACAGGAACCATTGTAACCGTAACCATAGCACCACTGGAGCAAGAAGGTTTGGTGCGTAATTACAGGGAAGTTCGCTAA 741 0.4386 MQPPTRTSQLINIPPTKMYASTSFTSPLLHDLLKDFHSRRLLFHSPLYQSSNSANPPASTNTHDSAESYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVSDSGNNPPARVVNTGIKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTIGERVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSQASTSQPPVLPVTGTIVTVTIAPLEQEGLVRNYREVR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1107g00004 246 SMART ring_2 153 194 IPR001841 -
Gabi1107g00004 246 SUPERFAMILY RING/U-box 131 200 - -
Gabi1107g00004 246 PANTHER RING-H2 FINGER PROTEIN ATL78 32 238 IPR044602 GO:0016567|GO:0016740
Gabi1107g00004 246 Pfam Ring finger domain 152 195 IPR001841 -
Gabi1107g00004 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 199 IPR013083 -
Gabi1107g00004 246 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gabi1107g00004 246 FunFam RING-H2 finger protein ATL73 114 200 - -
Gabi1107g00004 246 CDD RING-H2_EL5-like 152 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1107g00004 Gabi-Chr1107 83004 83962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1107g00004 54 199 C3H Transcription Factor Family AT3G10910 48.052 9.98e-42 139