Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1106g00020 ATGATGCGAAGAAACCGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGCTCCAGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACGTGAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGCGAAGTTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGAGATTTTAGATGCAGATAAACGACCATCCTATAGGTGGCTTATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTCCCTTTGGGTGTGACAGTGCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGTTGGTGGCACTGTGTTCTAAATGTGGAAACAACTATTGCTGTCACACAGAATTTTGTGAATTCCAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGCTGGGTTGCTTGCTTTAGATGAAGATAATTATGAAAATCTCAGACAGAACATGTCATGTAATGAAAAAAACTTAGGCAACTCCGATTTGTCGAGGAAAGGGAAAAGAGCCAAAACTCTGAAAGATGCAGATGATCTATATTATGAAAGATCCATAAATGGTGCATCTAGAAGCTATAATTTATGGAAAGATGGATTTTCCTATGATGTAAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTATAATTCCCTGTGGAGTTCCGGCAACAGTATTGGTCAACGAGAACTAAGAGAATGGTTATACAAGCTTTGGATTCAGAAACCAAAAATGAGAGAGCTAATATGGAAGGGAGCATGTGCTGCACTAAATGCTGGCAAATGGTTAGAATGCGTATCAAAAATTTGTGCCTTCCACAATTTGCCCCCTCCCACTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTATATCTAGTGGGAAACTCTGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAATTTTACAGTCTGCTGCATGAAGTCAACTCCCCTCTCAGGAAACATATTCCTGATGTTTTGGCCAGTGGGATTGTTTATCTTGAAAATGGATCTTATACCAATTTAACTTGGGATGGAAAAGGAGTTCCTGATGTCATTGCCGAGAGCAATCTTATCAGGAAGAAATGCGATGTTGATGGTTTCTCATTTGGGGTATGGAGCAAGAAACAGTTAGAGTATAGGAATGCTGGAATGCTGGTCGATGGATCAGTTAGTGGTCACTCAAGCATATGGCCATATATGATAACAAAACGATGTGAAGGGAATATGTTTGCAGAGTTAAGAGACAAACTATCATGGGAAGATACAACAAACTTGGCCGCCTTCTTGGGGGAGCAGCTGCGCCACCTTCATCTTTTGCCACATCCTCCTTTAAATATTTCATCTTTCTCTGATGCTGATCATGAATTTAGCCTGCCTGAGACCAATGGTTGTATTGCAACTGTTAATTATAATTCAAACACTGCAGCAGAATGGGGAGTCTTCACCAGAACCTTAACAAAGAAGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTGGCAAACTAATAGAGAAAATTGATGAATATATCCCTCCTGATTTTACTAAGCTGCTAAATATAACGGAGAATTTTGCAAGCGGTGTTTGTAAACCTTGTTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCAATGGTTTGTTCTACCTCCAGTGGGAATAAAGAAGATACTGCCCTGGTGGACAATGGTTTTGTGAGTAACTATGATGAAGTGAAATCCTGGTGTCCAAGCTACATCCTTGATTTCAGTGATATTTCGATAGGTGATCCTATTTTTGACTTGATACCAATTTATTTGGATGTGTTTAGAGGTGATTCGAATCTCCTTAAGCGATTTTTAGAAAGCTACAAACTTCCTTTTGCTAGTAACATATCAAAGCCAACAGAGGGTGGTCAAAAGTTTGGCCGACTTTCATATATTGCTATGTGCTATTGTATTTTGCATGATGACAATGTCTTGGGAGCTATTTTTAGCATATGGGATGAACTGAGATCAACAAAGTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTGAATAATTACAAAGGTTTTCCTTGA 2439 0.3985 MMRRNRHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYVKVQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDFFEILDADKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNVETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRAGLLALDEDNYENLRQNMSCNEKNLGNSDLSRKGKRAKTLKDADDLYYERSINGASRSYNLWKDGFSYDVNFLSMFLDKDRDHYNSLWSSGNSIGQRELREWLYKLWIQKPKMRELIWKGACAALNAGKWLECVSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGLGTELEFYSLLHEVNSPLRKHIPDVLASGIVYLENGSYTNLTWDGKGVPDVIAESNLIRKKCDVDGFSFGVWSKKQLEYRNAGMLVDGSVSGHSSIWPYMITKRCEGNMFAELRDKLSWEDTTNLAAFLGEQLRHLHLLPHPPLNISSFSDADHEFSLPETNGCIATVNYNSNTAAEWGVFTRTLTKKRKDVSSRLTKWGDPIPGKLIEKIDEYIPPDFTKLLNITENFASGVCKPCSWIHSDIMDDNIYMEPSMVCSTSSGNKEDTALVDNGFVSNYDEVKSWCPSYILDFSDISIGDPIFDLIPIYLDVFRGDSNLLKRFLESYKLPFASNISKPTEGGQKFGRLSYIAMCYCILHDDNVLGAIFSIWDELRSTKSWEEVELTVWGELNNYKGFP 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1106g00020 812 Gene3D Cupin 3 210 - -
Gabi1106g00020 812 ProSiteProfiles JmjC domain profile. 62 225 IPR003347 -
Gabi1106g00020 812 FunFam F-box protein At1g78280 3 210 - -
Gabi1106g00020 812 SUPERFAMILY Clavaminate synthase-like 7 217 - -
Gabi1106g00020 812 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 431 - -
Gabi1106g00020 812 SMART cupin_9 53 220 IPR003347 -
Gabi1106g00020 812 SUPERFAMILY Protein kinase-like (PK-like) 512 744 IPR011009 -
Gabi1106g00020 812 Pfam Cupin-like domain 26 212 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1106g00020 Gabi-Chr1106 97158 107395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1106g00020 9 808 Glycosyltransferase AT1G78280 60.907 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi1106g00020 Cupin_8 2.6e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1106g00020 - - gmx:100792541 1463.74