Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1106g00019 ATGAGAATCTGCCGGACAAATACAAAGAATAACGGGAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAGAGAGTATGATGCGAAGAAACCGGTTATGCTTACTGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGCTCCAGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACGTGAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGCGAAGTTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGAGATTTTAGATGCAGATAAACGACCATCCTATAGGTGGCTTATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTCCCTTTGGGTGTGACAGTGCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGTTGGTGGCACTGTGTTCTAAATGTGGAAACAACTATTGCTGTCACACAGAATTTTGTGAATTCCAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGCTGGGTTGCTTGCTTTAGATGAAGATAATTATGAAAATCTCAGACAGAACATGTCATGTAATGAAAAAAACTTAGGCAACTCCGATTTGTCGAGGAAAGGGAAAAGAGCCAAAACTCTGAAAGATGCAGATGATCTATATTATGAAAGATCCATAAATGGTGCATCTAGAAGCTATAATTTATGGAAAGATGGATTTTCCTATGATGTAAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTATAATTCCCTGTGGAGTTCCGGCAACAGTATTGGTCAACGAGAACTAAGAGAATGGTTATACAAGCTTTGGATTCAGAAACCAAAAATGAGAGAGCTAATATGGAAGGGAGCATGTGCTGCACTAAATGCTGGCAAATGGTTAGAATGCGTATCAAAAATTTGTGCCTTCCACAATTTGCCCCCTCCCACTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTATATCTAGTGGGAAACTCTGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAATTTTACAGTCTGCTGCATGAAGTCAACTCCCCTCTCAGGAAACATATTCCTGATGTTTTGGCCAGTGGGATTGTTTATCTTGAAAATGGATCTTATACCAATTTAACTTGGGATGGAAAAGGAGTTCCTGATGTCATTGCCGAGAGCAATCTTATCAGGAAGAAATGCGATGTTGATGGTTTCTCATTTGGGGTATGGAGCAAGAAACAGTTAGAGTATAGGAATGCTGGAATGCTGGTCGATGGATCAGTTAGTGGTCACTCAAGCATATGGCCATATATGATAACAAAACGATGTGAAGGGAATATGTTTGCAGAGTTAAGAGACAAACTATCATGGGAAGATACAACAAACTTGGCCGCCTTCTTGGGGGAGCAGCTGCGCCACCTTCATCTTTTGCCACATCCTCCTTTAAATATTTCATCTTTCTCTGATGCTGATCATGAATTTAGCCTGCCTGAGACCAATGGTTGTATTGCAACTGTTAATTATAATTCAAACACTGCAGCAGAATGGGGAGTCTTCACCAGAACCTTAACAAAGAAGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTGGCAAACTAATAGAGAAAATTGATGAATATATCCCTCCTGATTTTACTAAGCTGCTAAATATAACGGAGAATTTTGCAAGCGGTGTTTGTAAACCTTGTTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCAATGGTTTGTTCTACCTCCAGTGGGAATAAAGAAGATACTGCCCTGGTGGACAATGGTTTTGTGAGTAACTATGATGAAGTGAAATCCTGGTGTCCAAGCTACATCCTTGATTTCAGTGATATTTCGATAGGTGATCCTATTTTTGACTTGATACCAATTTATTTGGATGTGTTTAGAGGTGATTCGAATCTCCTTAAGCGATTTTTAGAAAGCTACAAACTTCCTTTTGCTAGTAACATATCAAAGCCAACAGAGGGTGGTCAAAAGTTTGGCCGACTTTCATATATTGCTATGTGCTATTGTATTTTGCATGATGACAATGTCTTGGGAGCTATTTTTAGCATATGGGATGAACTGAGATCAACAAAGTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTGAATAATTACAAAGGTTTTCCTTGA 2562 0.3989 MRICRTNTKNNGNVERIKDISLKDFYREYDAKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYVKVQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDFFEILDADKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNVETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRAGLLALDEDNYENLRQNMSCNEKNLGNSDLSRKGKRAKTLKDADDLYYERSINGASRSYNLWKDGFSYDVNFLSMFLDKDRDHYNSLWSSGNSIGQRELREWLYKLWIQKPKMRELIWKGACAALNAGKWLECVSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGLGTELEFYSLLHEVNSPLRKHIPDVLASGIVYLENGSYTNLTWDGKGVPDVIAESNLIRKKCDVDGFSFGVWSKKQLEYRNAGMLVDGSVSGHSSIWPYMITKRCEGNMFAELRDKLSWEDTTNLAAFLGEQLRHLHLLPHPPLNISSFSDADHEFSLPETNGCIATVNYNSNTAAEWGVFTRTLTKKRKDVSSRLTKWGDPIPGKLIEKIDEYIPPDFTKLLNITENFASGVCKPCSWIHSDIMDDNIYMEPSMVCSTSSGNKEDTALVDNGFVSNYDEVKSWCPSYILDFSDISIGDPIFDLIPIYLDVFRGDSNLLKRFLESYKLPFASNISKPTEGGQKFGRLSYIAMCYCILHDDNVLGAIFSIWDELRSTKSWEEVELTVWGELNNYKGFP 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1106g00019 853 SUPERFAMILY Clavaminate synthase-like 12 258 - -
Gabi1106g00019 853 SMART cupin_9 94 261 IPR003347 -
Gabi1106g00019 853 Pfam Cupin-like domain 31 253 IPR041667 -
Gabi1106g00019 853 SUPERFAMILY Protein kinase-like (PK-like) 553 785 IPR011009 -
Gabi1106g00019 853 Gene3D Cupin 3 251 - -
Gabi1106g00019 853 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 472 - -
Gabi1106g00019 853 ProSiteProfiles JmjC domain profile. 103 266 IPR003347 -
Gabi1106g00019 853 FunFam F-box protein At1g78280 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1106g00019 Gabi-Chr1106 97158 107841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1106g00019 2 849 Glycosyltransferase AT1G78280 60.575 0.0 1062
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi1106g00019 Cupin_8 2.9e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1106g00019 - - gmx:100792541 1530.38