Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1106g00018 ATGGAGTCTCAGCCTCAGAGAGATCGCAGGGCAGATGCTCTTGGAGATCTTCGTGTCCTTCACGATGAAATCCTCTGCACAATTTTGGAACGACTCACTCCACGAGATGTTGCTCGCGTCGCTTGCGTTAGCAGTGTAATGTACATACTGTGCAATGAAGAACCACTGTGGATGAGTCTATGTCTAAAAGAAGTATCTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGCCCTGCATAAGTATAATCTGCCGGACAAATACAAAGAGTACCATCGAGGACCTTTATATTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGGTGTCATACAACATTGGATGCATTTTATGCAGATAACGGGAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAGAGAGTATGATGCGAAGAAACCGGTTATGCTTACTGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGCTCCAGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCATACGTGAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGCGAAGTTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGAGATTTTAGATGCAGATAAACGACCATCCTATAGGTGGCTTATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCTGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTCCCTTTGGGTGTGACAGTGCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGTTGGTGGCACTGTGTTCTAAATGTGGAAACAACTATTGCTGTCACACAGAATTTTGTGAATTCCAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGCTGGGTTGCTTGCTTTAGATGAAGATAATTATGAAAATCTCAGACAGAACATGTCATGTAATGAAAAAAACTTAGGCAACTCCGATTTGTCGAGGAAAGGGAAAAGAGCCAAAACTCTGAAAGATGCAGATGATCTATATTATGAAAGATCCATAAATGGTGCATCTAGAAGCTATAATTTATGGAAAGATGGATTTTCCTATGATGTAAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCACTATAATTCCCTGTGGAGTTCCGGCAACAGTATTGGTCAACGAGAACTAAGAGAATGGTTATACAAGCTTTGGATTCAGAAACCAAAAATGAGAGAGCTAATATGGAAGGGAGCATGTGCTGCACTAAATGCTGGCAAATGGTTAGAATGCGTATCAAAAATTTGTGCCTTCCACAATTTGCCCCCTCCCACTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTATATCTAGTGGGAAACTCTGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAATTTTACAGTCTGCTGCATGAAGTCAACTCCCCTCTCAGGAAACATATTCCTGATGTTTTGGCCAGTGGGATTGTTTATCTTGAAAATGGATCTTATACCAATTTAACTTGGGATGGAAAAGGAGTTCCTGATGTCATTGCCGAGAGCAATCTTATCAGGAAGAAATGCGATGTTGATGGTTTCTCATTTGGGGTATGGAGCAAGAAACAGTTAGAGTATAGGAATGCTGGAATGCTGGTCGATGGATCAGTTAGTGGTCACTCAAGCATATGGCCATATATGATAACAAAACGATGTGAAGGGAATATGTTTGCAGAGTTAAGAGACAAACTATCATGGGAAGATACAACAAACTTGGCCGCCTTCTTGGGGGAGCAGCTGCGCCACCTTCATCTTTTGCCACATCCTCCTTTAAATATTTCATCTTTCTCTGATGCTGATCATGAATTTAGCCTGCCTGAGACCAATGGTTGTATTGCAACTGTTAATTATAATTCAAACACTGCAGCAGAATGGGGAGTCTTCACCAGAACCTTAACAAAGAAGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTGGCAAACTAATAGAGAAAATTGATGAATATATCCCTCCTGATTTTACTAAGCTGCTAAATATAACGGAGAATTTTGCAAGCGGTGTTTGTAAACCTTGTTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCAATGGTTTGTTCTACCTCCAGTGGGAATAAAGAAGATACTGCCCTGGTGGACAATGGTTTTGTGAGTAACTATGATGAAGTGAAATCCTGGTGTCCAAGCTACATCCTTGATTTCAGTGATATTTCGATAGGTGATCCTATTTTTGACTTGATACCAATTTATTTGGATGTGTTTAGAGGTGATTCGAATCTCCTTAAGCGATTTTTAGAAAGCTACAAACTTCCTTTTGCTAGTAACATATCAAAGCCAACAGAGGGTGGTCAAAAGTTTGGCCGACTTTCATATATTGCTATGTGCTATTGTATTTTGCATGATGACAATGTCTTGGGAGCTATTTTTAGCATATGGGATGAACTGAGATCAACAAAGTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTGAATAATTACAAAGGTTTTCCTTGA 2904 0.4029 MESQPQRDRRADALGDLRVLHDEILCTILERLTPRDVARVACVSSVMYILCNEEPLWMSLCLKEVSGLLQYKGSWKKTALHKYNLPDKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLDAFYADNGNVERIKDISLKDFYREYDAKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVSYVKVQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDFFEILDADKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNVETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRAGLLALDEDNYENLRQNMSCNEKNLGNSDLSRKGKRAKTLKDADDLYYERSINGASRSYNLWKDGFSYDVNFLSMFLDKDRDHYNSLWSSGNSIGQRELREWLYKLWIQKPKMRELIWKGACAALNAGKWLECVSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGLGTELEFYSLLHEVNSPLRKHIPDVLASGIVYLENGSYTNLTWDGKGVPDVIAESNLIRKKCDVDGFSFGVWSKKQLEYRNAGMLVDGSVSGHSSIWPYMITKRCEGNMFAELRDKLSWEDTTNLAAFLGEQLRHLHLLPHPPLNISSFSDADHEFSLPETNGCIATVNYNSNTAAEWGVFTRTLTKKRKDVSSRLTKWGDPIPGKLIEKIDEYIPPDFTKLLNITENFASGVCKPCSWIHSDIMDDNIYMEPSMVCSTSSGNKEDTALVDNGFVSNYDEVKSWCPSYILDFSDISIGDPIFDLIPIYLDVFRGDSNLLKRFLESYKLPFASNISKPTEGGQKFGRLSYIAMCYCILHDDNVLGAIFSIWDELRSTKSWEEVELTVWGELNNYKGFP 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1106g00018 967 Pfam F-box-like 22 63 IPR001810 GO:0005515
Gabi1106g00018 967 SUPERFAMILY Clavaminate synthase-like 124 372 - -
Gabi1106g00018 967 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 14 586 - -
Gabi1106g00018 967 Gene3D - 6 91 - -
Gabi1106g00018 967 SUPERFAMILY Protein kinase-like (PK-like) 667 899 IPR011009 -
Gabi1106g00018 967 Pfam Cupin-like domain 145 367 IPR041667 -
Gabi1106g00018 967 SUPERFAMILY F-box domain 7 78 IPR036047 GO:0005515
Gabi1106g00018 967 Gene3D Cupin 112 365 - -
Gabi1106g00018 967 ProSiteProfiles JmjC domain profile. 217 380 IPR003347 -
Gabi1106g00018 967 SMART cupin_9 208 375 IPR003347 -
Gabi1106g00018 967 FunFam F-box protein At1g78280 108 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1106g00018 Gabi-Chr1106 97158 108011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1106g00018 1 963 Glycosyltransferase AT1G78280 61.185 0.0 1211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi1106g00018 Cupin_8 3.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1106g00018 - - gmx:100792541 1746.87