Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1106g00013 ATGCAAAGGTTCTTCTTCTCTGCAATATGCAGAAAAGCAGGTGAACCTCTTGTTATTGAGGAAATTGAGGTTGACCCTCCAAAAGCCTGGGAGGTTCGGATCAAGATTTTATGCACTTCTCTGTGTCACTCTGATGTAACCATGTGGAAAATAGACTCAGTTCCGGTTGCTAAATTTCCAAGAATTTTCGGACACGAAGCTGTGGGAATTGTGGAGAGCTTGGGGGAGCATGTGGAAGAATTTAAAGAGGGGGACTTAGTGGTGCCAGTGTTCCTCGCTAACTGTGGGGAATGCATAGATTGCAAAAGCACAAAAAGCAACATTTGCTCCAAGTTCGGTAACCAGTTGATCAATAACATGCCAAGAGACGGAACCAGCAGATTTAGGGACGTGAAAGGAGAATCGGTGTACCACTTTTTCTGTGTATCTAGCTTCTCTGAATACACCGTGGTTGACGTGACCCATGTGGTTAAAATTAACCATGAGCTTCCTGTTGATAAGGCTTGCTTGCTGAGTTGCGGTGTTTCAACAGGGGTGGGCGCAGCATGGAAAGTGGCCAACGTAGAAGAAGGGTCAACAGTGGCTATCTTTGGGCTTGGTGCTGTAGGCCTAGCTGTTGCTATGGCAGCAAAGCAACGGGGAGCGTCAAAGATCATAGGCGTCGATCTAAACCATGCAAAATTTGAAATAGGAAAGAGTTTTGGAGTCACTGATTTTGTGAATCCCTCCACTTGCAAGGAGAAGTCAGTGAGCGAGGTGATTAAGGAAATGACAAATGGAGGTGCTGATTATTGCTTCGAGTGTATAGGCTTGGCGTCATTAATGGCAGAGGCTCATAATAGTAGCCGAGATGGTTGGGGGAAAACAGTGATAATAGGGGTGGAAATGCATGGCTCGCCATTGACTTTGAGTCCTTACCACATAATGAGAGGCCGAACTATCACCGGATCACTATTTGGAGGCCTCAAACCCAAAACTGATCTTCCCTTCCTTGCTAAGAAGTACTTGGACAAAGAGCTTAGCTTGGATGGCTTCATATCGCATGAGGTGGACCTGGAGGACATTAACAAAGCTTTTGAGTATCTCCAGGAAGGAAAGAGCCTCCGTTGCATTATAAGGATGAATCATTAG 1131 0.4562 MQRFFFSAICRKAGEPLVIEEIEVDPPKAWEVRIKILCTSLCHSDVTMWKIDSVPVAKFPRIFGHEAVGIVESLGEHVEEFKEGDLVVPVFLANCGECIDCKSTKSNICSKFGNQLINNMPRDGTSRFRDVKGESVYHFFCVSSFSEYTVVDVTHVVKINHELPVDKACLLSCGVSTGVGAAWKVANVEEGSTVAIFGLGAVGLAVAMAAKQRGASKIIGVDLNHAKFEIGKSFGVTDFVNPSTCKEKSVSEVIKEMTNGGADYCFECIGLASLMAEAHNSSRDGWGKTVIIGVEMHGSPLTLSPYHIMRGRTITGSLFGGLKPKTDLPFLAKKYLDKELSLDGFISHEVDLEDINKAFEYLQEGKSLRCIIRMNH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1106g00013 376 SUPERFAMILY GroES-like 325 373 IPR011032 -
Gabi1106g00013 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 178 317 - -
Gabi1106g00013 376 Gene3D - 8 369 - -
Gabi1106g00013 376 SUPERFAMILY GroES-like 7 183 IPR011032 -
Gabi1106g00013 376 FunFam Alcohol dehydrogenase 6 8 190 - -
Gabi1106g00013 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 64 78 IPR002328 GO:0008270|GO:0016491
Gabi1106g00013 376 Gene3D - 178 317 - -
Gabi1106g00013 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 337 IPR036291 -
Gabi1106g00013 376 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
Gabi1106g00013 376 Pfam Alcohol dehydrogenase GroES-like domain 31 159 IPR013154 -
Gabi1106g00013 376 Pfam Zinc-binding dehydrogenase 201 322 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1106g00013 Gabi-Chr1106 63608 69894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1106g00013 31 362 Monolignol Biosynthesis Gene Families AT2G21730 26.705 1.72e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1106g00013 K00121 - qsu:112023922 573.548