Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1106g00012 ATGGAGAGCAAAAGCGGTACCCAAAAAAATATTGGCAAGCCAATAAGATGCAAAGCTGCAATATGCAGAAAAGCAGGTGAACCTCTTGTTATTGAGGAAATTGAGGTTGACCCTCCAAAAGCCTGGGAGGTTCGGATCAAGATTTTATGCACTTCTCTGTGTCACTCTGATGTAACCATGTGGAAAATAGACTCAGTTCCGGTTGCTAAATTTCCAAGAATTTTCGGACACGAAGCTGTGGGAATTGTGGAGAGCTTGGGGGAGCATGTGGAAGAATTTAAAGAGGGGGACTTAGTGGTGCCAGTGTTCCTCGCTAACTGTGGGGAATGCATAGATTGCAAAAGCACAAAAAGCAACATTTGCTCCAAGTTCGGTAACCAGTTGATCAATAACATGCCAAGAGACGGAACCAGCAGATTTAGGGACGTGAAAGGAGAATCGGTGTACCACTTTTTCTGTGTATCTAGCTTCTCTGAATACACCGTGGTTGACGTGACCCATGTGGTTAAAATTAACCATGAGCTTCCTGTTGATAAGGCTTGCTTGCTGAGTTGCGGTGTTTCAACAGGGGTGGGCGCAGCATGGAAAGTGGCCAACGTAGAAGAAGGGTCAACAGTGGCTATCTTTGGGCTTGGTGCTGTAGGCCTAGCTGTTGCTATGGCAGCAAAGCAACGGGGAGCGTCAAAGATCATAGGCGTCGATCTAAACCATGCAAAATTTGAAATAGGAAAGAGTTTTGGAGTCACTGATTTTGTGAATCCCTCCACTTGCAAGGAGAAGTCAGTGAGCGAGGTGATTAAGGAAATGACAAATGGAGGTGCTGATTATTGCTTCGAGTGTATAGGCTTGGCGTCATTAATGGCAGAGGCTCATAATAGTAGCCGAGATGGTTGGGGGAAAACAGTGATAATAGGGGTGGAAATGCATGGCTCGCCATTGACTTTGAGTCCTTACCACATAATGAGAGGCCGAACTATCACCGGATCACTATTTGGAGGCCTCAAACCCAAAACTGATCTTCCCTTCCTTGCTAAGAAGTACTTGGACAAAGAGCTTAGCTTGGATGGCTTCATATCGCATGAGGTGGACCTGGAGGACATTAACAAAGCTTTTGAGTATCTCCAGGAAGGAAAGAGCCTCCGTTGCATTATAAGGATGAATCATTAG 1167 0.455 MESKSGTQKNIGKPIRCKAAICRKAGEPLVIEEIEVDPPKAWEVRIKILCTSLCHSDVTMWKIDSVPVAKFPRIFGHEAVGIVESLGEHVEEFKEGDLVVPVFLANCGECIDCKSTKSNICSKFGNQLINNMPRDGTSRFRDVKGESVYHFFCVSSFSEYTVVDVTHVVKINHELPVDKACLLSCGVSTGVGAAWKVANVEEGSTVAIFGLGAVGLAVAMAAKQRGASKIIGVDLNHAKFEIGKSFGVTDFVNPSTCKEKSVSEVIKEMTNGGADYCFECIGLASLMAEAHNSSRDGWGKTVIIGVEMHGSPLTLSPYHIMRGRTITGSLFGGLKPKTDLPFLAKKYLDKELSLDGFISHEVDLEDINKAFEYLQEGKSLRCIIRMNH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1106g00012 388 Pfam Zinc-binding dehydrogenase 213 334 IPR013149 -
Gabi1106g00012 388 Gene3D - 20 381 - -
Gabi1106g00012 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 349 IPR036291 -
Gabi1106g00012 388 FunFam Alcohol dehydrogenase 6 20 202 - -
Gabi1106g00012 388 SUPERFAMILY GroES-like 337 385 IPR011032 -
Gabi1106g00012 388 PANTHER ALCOHOL DEHYDROGENASE 12 384 - -
Gabi1106g00012 388 FunFam S-(hydroxymethyl)glutathione dehydrogenase 190 329 - -
Gabi1106g00012 388 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
Gabi1106g00012 388 Gene3D - 190 329 - -
Gabi1106g00012 388 SUPERFAMILY GroES-like 11 195 IPR011032 -
Gabi1106g00012 388 Pfam Alcohol dehydrogenase GroES-like domain 43 171 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1106g00012 Gabi-Chr1106 63608 69911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1106g00012 43 374 Monolignol Biosynthesis Gene Families AT2G21730 26.705 1.84e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1106g00012 K00121 - qsu:112023922 588.571