Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1100g00004 ATGCCATTCAGGAGTATTGTTCGTGACTTCAAGGAGATTGGAGAGGGCATTAGCAACATGTATAGAAGAGGGGCTGAAGCTAAGCATGTGCATCGCCATGGAAAATCTCTCATTGCACCAGAATGTTCCTCACCATCACCGTCACCACCACCACCATCATCGTCGTCATCGTCACAGAGCCGGTGGGCTAATTTACCCCCTGAGTTGCTCTTAGACATAATTCAAAGGGTGGAAGCCAGTGAAACTTCATGGCCTGCACGCAGAGCACTTGTAGCGTGTGCCTCAGTTTGTAGGTTGTGGAGGGAAATAACAAAGGACGTGGTCAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGACACTGCAATCCAGTGTTTTATTAAGAGAGAAAGGGTGACTTCCACATATTGTTTATATCTCGGTCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGCTATTGGCAGCAAAGAAGATTAGAAGGGCAACGTGTACAGAATTTTTAATATCATTGGTTGCTCATGATTTCTCTCGTGCAAACAATACTCACATTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTATGATCTTGGATGGTCAACCCCCACATGATTCCTCACTTCCATTAAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAGGGTTACTGCTGCTAACCATAAAGTTGCTACAGTATCTTATGAACTCAATGTTCTCCGTACAAGAGGTCCAAGGAGAATGCGTTGCACAATGCACTTAATCCCTATATCTGCAATCCAAGAAGGAGGAACTGCCCCTACTCCTTTGAAGTTCACCAATTGCCTTAATGAGCATGCATCTACCATTCCCATTTCAAAAGGAAAGAAGCCACAAGTTAACTTTGGCTCAACTGGCACAGGCAATAATACTCCAGAATCAACCCAGAGTGCAAGGGAACCATTGATTCTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGAAGAGTAACTGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCGAGCCAAATTGTTTCAGTGGCCGAACAAGAGAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTCTCTGCTTTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACAAAACCAGTTTGTGAATGA 1272 0.4465 MPFRSIVRDFKEIGEGISNMYRRGAEAKHVHRHGKSLIAPECSSPSPSPPPPSSSSSSQSRWANLPPELLLDIIQRVEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGWLTFPISLKQPGPRDTAIQCFIKRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVAHDFSRANNTHIGKLRSNFLGTKFMILDGQPPHDSSLPLNCKLQQRVHLKQVLPRVTAANHKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNCLNEHASTIPISKGKKPQVNFGSTGTGNNTPESTQSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQIVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPVCE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1100g00004 423 CDD F-box_AtTLP-like 62 106 - -
Gabi1100g00004 423 Gene3D Tubby Protein; Chain A 120 423 IPR025659 -
Gabi1100g00004 423 MobiDBLite consensus disorder prediction 302 329 - -
Gabi1100g00004 423 SUPERFAMILY Tubby C-terminal domain-like 111 423 IPR025659 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 178 194 IPR000007 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 243 270 IPR000007 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Gabi1100g00004 423 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Gabi1100g00004 423 SUPERFAMILY F-box domain 58 125 IPR036047 GO:0005515
Gabi1100g00004 423 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Gabi1100g00004 423 Gene3D - 55 108 - -
Gabi1100g00004 423 PANTHER TUBBY-RELATED 54 420 - -
Gabi1100g00004 423 Pfam Tub family 123 418 IPR000007 -
Gabi1100g00004 423 MobiDBLite consensus disorder prediction 37 61 - -
Gabi1100g00004 423 Pfam F-box domain 62 109 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1100g00004 Gabi-Chr1100 28986 31645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1100g00004 28 423 TUB Transcription Factor Family AT1G47270 63.092 5.18e-167 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gabi1100g00004 Tub 1.1e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1100g00004 K19600 - gmx:100796250 725.317