Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1099g00002 ATGGCGTCATTGGGATCTTCGTTCTGGTGCTACAGATGCAACCGCATCGTTAGAGTTCCGATCGTGGCGGAACAAGACCCCATACTTCTCTGTCCCGATTGCTCTTCCGGTTTCCTCGAAGAAATCAGAAACCCTACCCACTCCAACTCCCACCGATTCGATACCGTCACCGACGACGCCGCCTCTCACTCCGACCACGGCGGAAGCAGAAGCCCAACATTCCGCCGGCGTTCTGCTCGCGGCGGTGACCGTTCGCCTTTCAACCCTGTAATCGTCCTTCGCGGCGGAAACGATGTCGTTTCGGCAGAGAGGCGTAACTTTGAGCTCTACTACAACGACGCCGGTTCAGGATCCGGTCTTCGACCATTACCGGCTAGCGTGACGGAGTTTTTAATGGGTTCAGGGTTCGACCATCTTCTGGACCAGTTGGCTCAGTTAGAAGGAACCCCGGTCCGGTTCGACCGGCCACCACCCCCTGCAGCATCAAAAGCCGCAATTGAATCGATGCCGGTTATTAAAATCGTTCATAGTCATGTCTATGCTGAATTGCAATGTGCCGTTTGCATGGAACCTTTTGAATTGAACTGTGACGCACGTGAGATGCCGTGTGGCCACGTGTACCATTCCGATTGCATCGTGCCGTGGCTGTCGGTGCGGAACTCGTGCCCGGTGTGCCGGCACGAGCTCCCCTCCACGGCAGCCGCGACAACCGCCGAGGTGGGTGATGGGGGTGCAGGGGATGATGCTGTGGGGTTGACCATATGGAGGCTACCTGGGGGTGGGTTTGCTGTGGGGAGGTTCATTGGAGGCAGGGAACTTCCTGTTGTGTACACTGAGATGGATGGTGGTGGGTTTAATGGTGTTGGTGTTGGTGGTGGTGGTGGTGGTGGTGCTCCTAGGAGGATTTCTTGGGATTCTAGTGTTGGAAGATCAAGGGAGAGTAGGGGATTGGGGGGTGCATTGCGTAATCTTTTGTCATATTTTGGGAGGGTTAGGAGTTCTTTCACTCGTTCTTCAAGTAGGAATTCAAGGGTGAGTGCAAGATCACGTGCTAGGTTGTACCACAGTTCTCTCTAG 1077 0.5487 MASLGSSFWCYRCNRIVRVPIVAEQDPILLCPDCSSGFLEEIRNPTHSNSHRFDTVTDDAASHSDHGGSRSPTFRRRSARGGDRSPFNPVIVLRGGNDVVSAERRNFELYYNDAGSGSGLRPLPASVTEFLMGSGFDHLLDQLAQLEGTPVRFDRPPPPAASKAAIESMPVIKIVHSHVYAELQCAVCMEPFELNCDAREMPCGHVYHSDCIVPWLSVRNSCPVCRHELPSTAAATTAEVGDGGAGDDAVGLTIWRLPGGGFAVGRFIGGRELPVVYTEMDGGGFNGVGVGGGGGGGAPRRISWDSSVGRSRESRGLGGALRNLLSYFGRVRSSFTRSSSRNSRVSARSRARLYHSSL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1099g00002 358 SMART ring_2 185 225 IPR001841 -
Gabi1099g00002 358 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Gabi1099g00002 358 Pfam Ring finger domain 184 226 IPR001841 -
Gabi1099g00002 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 232 IPR013083 -
Gabi1099g00002 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 230 - -
Gabi1099g00002 358 SUPERFAMILY RING/U-box 165 231 - -
Gabi1099g00002 358 Pfam Protein of unknown function (DUF1117) 250 353 IPR010543 -
Gabi1099g00002 358 Pfam zinc-ribbon 7 42 IPR039525 GO:0061630
Gabi1099g00002 358 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
Gabi1099g00002 358 MobiDBLite consensus disorder prediction 49 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1099g00002 Gabi-Chr1099 114602 116183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1099g00002 122 231 C3H Transcription Factor Family AT5G01980 44.545 5.00e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1099g00002 K11982 - gmx:121172634 403.675