Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1099g00001 ATGATGTTGAATCGTGGTGTTAGTGTTGTTGGTGGTGGTGAAGAAGAAGATAAGCTCTATGAACAACTATGGAAGGCATGTGCTGGACCTCATGTGGAAGTTCCTCATGCTGGTCAAAGGGTCTTCTATTTTCCTCAAGGACACATGGAACAATTAGAAGTTTCAACAAATCAGGAACTAAATCAGAGGATTCCACTGTTCAAACTTCCTACAAAGATCCTTTGTCGTGTCGTCAACGTCAATTTACTGGCTGAACAAGAAACGGATGAGATTTATGCACAGATTACTCTGGTGCCGGAATCTAATCAAGCTGAACCTACAAGCTCTGATCCATGCCCTGCTGAACTTCCAAGGCCAAGAATTCACTCCTTCTGCAAGGTCTTAACTGCCTCTGATACCAGCACACATGGTGGTTTCTCTGTTCTCAGGAAGCATGCAACTGAATGCCTTCCACCATTGGTAATGCTATATGTTTGGACATGTCCCAACCAAAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTCACAACTGGATGAACTTTTGCAACTTCCAAGAGATTAGTTGCTGGAGATACTTTTGTGTTTCTAAGAGGGAACAATGGAGAATTACGTGTTGGTGTGAGGCGTCTTGCTCCTCTTCAGAGCAGCATGCCTTCATCTGTGATTTCTAGTCAGAGCATGCATCTAGGAGTTCTTGCAACTGCATCTCAT 747 0.4364 MMLNRGVSVVGGGEEEDKLYEQLWKACAGPHVEVPHAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPTKILCRVVNVNLLAEQETDEIYAQITLVPESNQAEPTSSDPCPAELPRPRIHSFCKVLTASDTSTHGGFSVLRKHATECLPPLVMLYVWTCPNQKDLHGYEWRFKHIFRGQPRRHLLTTGWXTFATSKRLVAGDTFVFLRGNNGELRVGVRRLAPLQSSMPSSVISSQSMHLGVLATASH 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1099g00001 250 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 250 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi1099g00001 250 Gene3D - 121 223 IPR015300 -
Gabi1099g00001 250 Pfam B3 DNA binding domain 124 222 IPR003340 GO:0003677
Gabi1099g00001 250 CDD B3_DNA 122 222 IPR003340 GO:0003677
Gabi1099g00001 250 FunFam Auxin response factor 122 224 - -
Gabi1099g00001 250 ProSiteProfiles B3 DNA-binding domain profile. 165 224 IPR003340 GO:0003677
Gabi1099g00001 250 SUPERFAMILY DNA-binding pseudobarrel domain 115 248 IPR015300 -
Gabi1099g00001 250 SMART B3_2 124 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1099g00001 Gabi-Chr1099 4 1858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1099g00001 13 250 B3 DNA Binding Superfamily AT2G46530 72.428 8.97e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi1099g00001 B3 1.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1099g00001 K14486 - gmx:100780060 429.869