Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1094g00001 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCACAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGTGGAGGAAACGTGAGAGTAAGGATATAAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1218 0.4097 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFTAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKWRKRESKDIRINRDQDEREPDHINAQQFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1094g00001 405 MobiDBLite consensus disorder prediction 119 173 - -
Gabi1094g00001 405 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi1094g00001 405 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi1094g00001 405 PANTHER SIN3B-RELATED 9 405 IPR039774 GO:0003714
Gabi1094g00001 405 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi1094g00001 405 SMART hdac_interact2seq4b 232 332 IPR013194 -
Gabi1094g00001 405 MobiDBLite consensus disorder prediction 83 109 - -
Gabi1094g00001 405 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi1094g00001 405 Pfam Sin3 family co-repressor 234 326 IPR013194 -
Gabi1094g00001 405 Coils Coil 305 335 - -
Gabi1094g00001 405 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi1094g00001 405 MobiDBLite consensus disorder prediction 188 217 - -
Gabi1094g00001 405 MobiDBLite consensus disorder prediction 83 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1094g00001 Gabi-Chr1094 11304 12521 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1094g00001 Sin3_corepress 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1094g00001 K11644 - aew:130792296 421.394