Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1092g00006 ATGTCAGCAAAGGAGAGAAAGAAGGAGGAGGTCGTAGAGGATAGAAAGGAGCAAAAGGTTCCTTTGCTGAAGCTCTTCTCATTTGCTGACTTTTATGATTGTGCCTTAATGGCGGTTGGATCTGTTGGGGCATGTGTTCATGGTGCATCTGTGCCTGTTTTCTTTATCTTCTTTGGAAAGATGATCAATGTCATAGGCATGGCTTACCTTTATCCCAAAGAAGCTTCCCATCAAGTTGCCAAGTATTCGTTGGATTTCGTGTATCTAAGTACAGTAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCAGCGAAGATGAGGATGGCATATTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACCGAGGCATCAACCGGAGAAGTCATCTCTTCTATTACAAGTGACATCATCGTTGTTCAAGATGCACTATCCGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCGGGCTTTATCATTGGCTTTGTGAGAGTATGGCAGATCAGTTTAGTGACACTTGCAATTGTACCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTGACGTTTGGGCTGGTGGCAAAAGTTCGGAAAGCTTATGTCAGGGCTGGTGAAATCGCTGAAGAGGTGTTAGGCAATGTCAGAACGGTACAGGCATTTGCAGGAGAAGAAAGAGCAGTAAGATTATACAAAGAGGCTCTGATGAACACATATAGAAATGGTCGAAAAGCAGGTTTGGCAAAGGGTTTGGGACTTGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTCTGCTTGTTTGGTTCAATAGCATTGTTGTTCACAAAAATATTGCCAATGGGGGGGAGGCTTTCACTACCATGCTCAATGTTGTGATCTCTGGCCTGTCACTTGGACAGGCAGCACCAGATATTTCTGCGTTTATCCGAGCAAAGGCAGCATCATATCCCATTTTTGAAATGATAGAGAGGGACACAATGAACAAAATAAGCTCAGAAATTGGTAAAACATTGAGCACATTGGAGGGTCACATCCAATTTAATGATGTCTATTTCAGTTACCCATCTCGTCCTGATGTAGTTGTCTTCAACAACCTTTGTCTTGATATTCCTTCAGGGAAAATTTTAGCTCTTGTGGGGGGAAGTGGTTCTGGAAAGAGCACCTTTATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTCAAATACTATTAGATGGGAATAATATCAAGGATCTTGATCTCAAATGGCTTAGACACCAAATTGGGCTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATTAGGGAGAACATATTGTATGGAAAAGATGATGCTACTCTTGAAGAACTAAATCATGCTATGCAGCTATCTGATGCTCAATCTTTCATTAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGGGGACAGAAGCAAAGAATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTGTTGGATGAAGCAACCAGTGCACTAGATTCAGAGTCCGAGAAGAGTGTACAAGAGGCACTTGATCGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGCTGTTGTTCAGGAAGGGAGGGTCGTGGAAATTGGCAACCATGAGGTGCTCATTTCCAACCCAAATAATGTATATGCATCTCTTGTTCAAATCCAGGAGGCAGCCTCTTTGCAAGGACATCCTTCTAAGGATCCTTGCTTGGAACTGTCATCAAGCATAATGCAGTCAAGAGAATTATCCTGTACAACAAGCTTCGGGGCTAGTTTTCGTTCAGATAAAGAATCCATTGGCCATTCTTGTGCTGATGAAATAGAAAGTGATGGAAAGTCAAGACATGTCTCAGCAAGAAGACTATATTCAATGATTGGTCCTGATTGGTTTTATGGGGTTTTTGGAACCTTGTGTGCATTTGTTGCTGGAGCTCTGATGCCACTTTTTGCTCTCGGAATCACTCACTGTCTTGTAGCATATTACATGGACTGGGATATAACACGTCATGAAGTTAAAAAAATTGCTTTCCTCTTCTGTGGAGGAGCAGTTGCAGCTATCACTGCCTATTCCATTGAACATCTTTCTTTTGGAATCATGGGCGAGAGACTTACCCTTCGTGTGAGAGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATAATACGAGCAACACAAGTTCTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTATTAAGAACTATAGTTGTTGATCGTTCTACCATTCTCTTACAAAATGTTGGTCTGGTTGTTTCATCATTCATCATTGCCTTCATTTTGAACTGGAGGATGACACTTGTTGTTTTGGCCACATATCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTTTTCATGCAAGGCTTTGGTGGCAACCTAAGTAAAGCATATCTAAAAGCCAACATGTTGGCTGCGGAGGCAGTGAGTAATATACGCACTGTTGCAGCATTTTGTTCTGAAGAAAAGATCCTTGAACTTTATGCTGCTGAGCTTGTTGAACCTTCCAAGCATTCGTTCAGACGGGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCTGTCTTGATGCAAAAGGAGCTTGCTAGTTTCAAATCAATTATGAAGTCGTTTATGGTTTTGATCGTAACAGCACTAGCTATGGGGGAGACTTTGGCACTAGCACCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTCGAAGTGATGGAGAGAAGGACAAGAATAATAGGTGATGCTGGAGAAGAGTTGGAGATAGTTGAAGGAACAATTGATCTAAAAAGAATCCATTTCAGCTACCCTTCAAGGCCAGAGGTTGTTATTTTTAATGATTTCAATCTAACAGTGCCCTCAGGAAAGAGCATTGCTTTGGTGGGGCATAGTGGTTCTGGCAAAAGCTCTGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGATTGATGGAAAAGACATCAAGAAACTCAATTTGAAATCCCTTAGGAAGCATATTGGTCTTGTGCAACAAGAACAAGCTCTTTTTGCAACATCAATTTATGAAAATATTCTATACGGGAAGGAAGGAGCATCTGAATCAGAAGTAATTGAAGCAGCTAAACTTGCCAATGCTCATAATTTTATTAGTGGTCTTCCTGAGGGCTACAACACCAAAGTTGGTGAGAGAGGAGTTCAACTATCTGGTGGCCAGAGACAAAGGGTAGCTATTGCTAGAGCTGTTTTGAAAAACCCTAAAATCTTGCTACTAGATGAAGCCACTAGTGCACTGGATGTGGAGTCAGAACGTGTGGTACAACAAGCTTTAGACAAATTGATGCAGAACAGAACAACAATTATGGTTGCACATAGGTTATCCACAATAAGAAATGCAGACCAAATATCAGTTTTACAGGATGGGAAGATAATTGAGCAAGGGACTCATTCAAGTCTTGTAGAGAACACAAGTGGAGCATACTTCAAATTAGTCAGCCTTCAACAACAACAACAGTATGTACAAGAACATGATGGATGA 3738 0.4093 MSAKERKKEEVVEDRKEQKVPLLKLFSFADFYDCALMAVGSVGACVHGASVPVFFIFFGKMINVIGMAYLYPKEASHQVAKYSLDFVYLSTVILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITSDIIVVQDALSEKVGNFMHYISRFIAGFIIGFVRVWQISLVTLAIVPLIALAGGLYAYVTFGLVAKVRKAYVRAGEIAEEVLGNVRTVQAFAGEERAVRLYKEALMNTYRNGRKAGLAKGLGLGSMHCVLFLSWALLVWFNSIVVHKNIANGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKAASYPIFEMIERDTMNKISSEIGKTLSTLEGHIQFNDVYFSYPSRPDVVVFNNLCLDIPSGKILALVGGSGSGKSTFISLIERFYEPLSGQILLDGNNIKDLDLKWLRHQIGLVNQEPALFATSIRENILYGKDDATLEELNHAMQLSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDSESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQEGRVVEIGNHEVLISNPNNVYASLVQIQEAASLQGHPSKDPCLELSSSIMQSRELSCTTSFGASFRSDKESIGHSCADEIESDGKSRHVSARRLYSMIGPDWFYGVFGTLCAFVAGALMPLFALGITHCLVAYYMDWDITRHEVKKIAFLFCGGAVAAITAYSIEHLSFGIMGERLTLRVREIMFSAILKNEIGWFDNTSNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVSSFIIAFILNWRMTLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEEKILELYAAELVEPSKHSFRRGQIAGIFYGISQFFIFSSYGLALWYGSVLMQKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMERRTRIIGDAGEELEIVEGTIDLKRIHFSYPSRPEVVIFNDFNLTVPSGKSIALVGHSGSGKSSVISLILRFYDPTSGKVMIDGKDIKKLNLKSLRKHIGLVQQEQALFATSIYENILYGKEGASESEVIEAAKLANAHNFISGLPEGYNTKVGERGVQLSGGQRQRVAIARAVLKNPKILLLDEATSALDVESERVVQQALDKLMQNRTTIMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLVENTSGAYFKLVSLQQQQQYVQEHDG 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1092g00006 1245 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Gabi1092g00006 1245 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Gabi1092g00006 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 989 1234 IPR027417 -
Gabi1092g00006 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 981 - -
Gabi1092g00006 1245 Pfam ABC transporter 1015 1163 IPR003439 GO:0005524
Gabi1092g00006 1245 Pfam ABC transporter 380 528 IPR003439 GO:0005524
Gabi1092g00006 1245 SUPERFAMILY ABC transporter transmembrane region 25 330 IPR036640 GO:0005524|GO:0016020
Gabi1092g00006 1245 SMART AAA_5 1023 1209 IPR003593 GO:0016887
Gabi1092g00006 1245 SMART AAA_5 388 589 IPR003593 GO:0016887
Gabi1092g00006 1245 PANTHER ABC TRANSPORTER B FAMILY 3 602 IPR039421 -
Gabi1092g00006 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
Gabi1092g00006 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1092g00006 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Gabi1092g00006 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1092g00006 1245 FunFam ABC transporter B family member 4 986 1241 - -
Gabi1092g00006 1245 FunFam ABC transporter B family member 1 351 600 - -
Gabi1092g00006 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 334 - -
Gabi1092g00006 1245 Gene3D ABC transporter type 1, transmembrane domain 24 965 IPR036640 GO:0005524|GO:0016020
Gabi1092g00006 1245 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524|GO:0016887
Gabi1092g00006 1245 SUPERFAMILY ABC transporter transmembrane region 663 976 IPR036640 GO:0005524|GO:0016020
Gabi1092g00006 1245 Gene3D - 987 1244 IPR027417 -
Gabi1092g00006 1245 CDD ABC_MTABC3_MDL1_MDL2 996 1231 - -
Gabi1092g00006 1245 Gene3D - 351 600 IPR027417 -
Gabi1092g00006 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1232 IPR003439 GO:0005524
Gabi1092g00006 1245 Pfam ABC transporter transmembrane region 42 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1092g00006 1245 Pfam ABC transporter transmembrane region 678 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1092g00006 Gabi-Chr1092 51356 63707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1092g00006 39 605 Calmodulin-binding Proteins AT2G36910 37.565 1.63e-108 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1092g00006 K05658 - gmx:100809752 2037.69