Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1091g00001 ATGACCGCGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAAGAGCAAGTTGTGGGCAGTTCCAATTCATCAACAAGGTTTATATAACATGAGGGCTAACCTCTGTAAAGCATTTTGA 1170 0.453 MTAGRGLKRKIGCIDVATQMGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKKSKLWAVPIHQQGLYNMRANLCKAF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1091g00001 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Gabi1091g00001 389 Gene3D Transferase(Phosphotransferase) domain 1 21 315 - -
Gabi1091g00001 389 CDD STKc_CAMK 29 277 - -
Gabi1091g00001 389 SMART serkin_6 30 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1091g00001 389 SUPERFAMILY Protein kinase-like (PK-like) 24 315 IPR011009 -
Gabi1091g00001 389 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Gabi1091g00001 389 FunFam Maternal embryonic leucine zipper kinase 22 299 - -
Gabi1091g00001 389 Pfam Protein kinase domain 31 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1091g00001 389 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 304 - -
Gabi1091g00001 389 ProSiteProfiles Protein kinase domain profile. 30 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1091g00001 Gabi-Chr1091 13633 15871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1091g00001 20 278 EF-hand Containing Proteins AT4G35310 44.074 9.05e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1091g00001 Pkinase 1.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1091g00001 - - gmx:100812729 592.808