Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi108g00001 ATGGTTGTTGATATGCTAGGTTCATTCGTCTCTGCCTTCCTGCAAGTTCTGTTGGATAGGATAGCTGGTCATGAGCTTATAGACTTCTTCCGGGGCAACCATCTTGATGAGGCACTTCTTGTGAAGTTGAAGATGCTTTTGCTATCCGTCACTACAGTGATTAGTGACGCTGAGGAGAAACAGTTTATTGATCCCTTGGTGAAAGAGTGGGTTGATAGGCTTAAAAATGCTGCCTACGATGCTGATGATGTCTTGGATGAGATTGCCACTAAAGCCATGCAAGACAAGATGGATTCTGGTTTTCACACCACCTTAGATCAGGTAAGAGATTATGCTTCTTCTCTCAATCCCTTTGCTGAACGAGTTAAATCAAAAGTTGATAGGATTGTTGAGAGGTTGAAATCTATAATAGAGCATAAAGATCTTCTTGGTCTTAAGGAAAATGGTGTTGATAAATCACTCCATTTAGCTTCAGCCACAACTTCTTTGGTGGATGAACATCGAGTGTATGGCAGAAGTGGTGATAGGGAGAAGATAATTGATTTTCTGTTATCAGGCAACTCAAATGAAGAAGGGGTTCCTGTGGTTGCAATTGTTGGGATGAGAGGGGTAGGTAAGACTACTCTTGCTCAGCTTTTGTACAATGATGTGAGGGTGAGGAACCATTTTCAATCAAGATCATGGACCTCCGTTTCAGAGACATTGAACGTGTATGAAATAACCAAAAAAGTTTTTGAGTCATTTACTTTATGGTATTCTAATATCTCAGACTTGAATGTACTCCAAATCAAGCTCAAGGATAGATTTACAAGACAGAGGTTTCTACTTGTTTTGGATGGATTTCAGAATGAGAACTTTCTTGACTGGGACATCCTCCAAAGGCCCTTTCTATCAGGAACCAGCGGAAGTAGAATTGTTGTCACCACACGTAGTCAAAGTGTTGCAACGGCAATTTGTGTTGATTTAACTCATTCCCTCTCGCTTCTGTCTCATGAAGACACATGGAAGTTATTCTCAAGTCATGCATTCAAATCAGGAAACCCGGATGAACATCCTGTCTTGACACAAATTGGCAAGAAAATAGTAAAGAAGTGCAATGGTCTCCCTCTAGCTGCAAAAACACTAGGGAGTCTCCTACGTTCTAAAGAGGATGCTGAGGAATGGGAAAGTATATCTAATAGTAGGATATGGGATTTACCAAGTGATAAGAGTAGCATTCTTCCTGCTTTAAGATTGAGCTACACTCATCTACCTTCTCAATTAAAGCGATGCTTTACTTATTGTTCCATATTTCCTAAAGGCTATGGAATAAAAAAGTGGAACTTGATCCATTTATGGATGGCTGAAGGTATCTTGCCACAACCAAAGACTGGGAAGCGAATGGAAGATGTAGGAGATGAATGCTTTCAAGAGTTGCTATCTAGGTCATTCTTTCATCAGTCATCTCACCACATATCGTGTTTTATGATGCATGACCTTATCAATGATCTAGCACAGTGTGTTGCAGGTGAATTCTGTTACAAGCTAGATGATGATAATCCAAGCAAAATCACTGTGAGTGTTCGTCATTTATCATATTTACAAGGCATATATGATCATGACCCTGAAAAATTTGAGGCCCTCTCTGAGTTCCAGCAACTTAGGACCTTCCTACCATTTAGATTCTCAGACTTTGGTTACTCCTCTTCAATTACTAGTATGGTTTCAATTCTATTACCAAAACTGAAACGCCTGCGTGTGCTCTCTTTGTCTCATTATCCAATTACCAAGTTGCATGATTCTGTTGGAAACTTAATGCATCTGCGGTACTTGGATCTTTCTTACACTGCAATTGAGCATCTACCTGATTCTGTAAGCACTTTGTATAACTTGGAGACACTCTTGTTGTTAGGTTGTCGTCGACTCACCATGTTACCAGCAAACATGTCCAACCTTGTCAACTTGCGCCATCTTGATATTAGTGGAAGCAGGGTGACTGAGATGCCAGCAAAATTTGGTAGACTAAAATCTCTCCAAGTTTTGACTAGTTTTGTTGTTAGCAGTGACGGGGGATCAAAAGTTAGTGAGTTGGGGGAGCTTTCTGAACTTCATGGAACACTTTTGATTGTGAACCTGCAAAATGTAGTTGATGAAAGAGAAGCCTTGAATGCAGGGTTGAGGAGAAAGAAACATCTTCAAGAGCTAGAATTCAAGTGGACGACTACAACTCATGATGTACAGAGTGAAACTAATGTACTCGAAATGCTAGAGCCACATCAAAATGTGAAAAGGCTCAAAATTCAGAATTTTGGTGGTAATAAGTTGCCAAATTGGTTGGGGAGTTCTTCATTCTCTAGTATGGTGTTTCTATATCTTTCAGAGTGCGGAAGTTGCTTGTCATTGCCATCCCTTGGACAATTGCCCTCCCTCAGAGAACTCTATATAGCAAAGATGACAAGCCTACAGAAGGTGGGTCCTGAATTCTATGGGAATGCAGTTGAGCCATTCAGATCATTGAAGATCATG 2505 0.404 MVVDMLGSFVSAFLQVLLDRIAGHELIDFFRGNHLDEALLVKLKMLLLSVTTVISDAEEKQFIDPLVKEWVDRLKNAAYDADDVLDEIATKAMQDKMDSGFHTTLDQVRDYASSLNPFAERVKSKVDRIVERLKSIIEHKDLLGLKENGVDKSLHLASATTSLVDEHRVYGRSGDREKIIDFLLSGNSNEEGVPVVAIVGMRGVGKTTLAQLLYNDVRVRNHFQSRSWTSVSETLNVYEITKKVFESFTLWYSNISDLNVLQIKLKDRFTRQRFLLVLDGFQNENFLDWDILQRPFLSGTSGSRIVVTTRSQSVATAICVDLTHSLSLLSHEDTWKLFSSHAFKSGNPDEHPVLTQIGKKIVKKCNGLPLAAKTLGSLLRSKEDAEEWESISNSRIWDLPSDKSSILPALRLSYTHLPSQLKRCFTYCSIFPKGYGIKKWNLIHLWMAEGILPQPKTGKRMEDVGDECFQELLSRSFFHQSSHHISCFMMHDLINDLAQCVAGEFCYKLDDDNPSKITVSVRHLSYLQGIYDHDPEKFEALSEFQQLRTFLPFRFSDFGYSSSITSMVSILLPKLKRLRVLSLSHYPITKLHDSVGNLMHLRYLDLSYTAIEHLPDSVSTLYNLETLLLLGCRRLTMLPANMSNLVNLRHLDISGSRVTEMPAKFGRLKSLQVLTSFVVSSDGGSKVSELGELSELHGTLLIVNLQNVVDEREALNAGLRRKKHLQELEFKWTTTTHDVQSETNVLEMLEPHQNVKRLKIQNFGGNKLPNWLGSSSFSSMVFLYLSECGSCLSLPSLGQLPSLRELYIAKMTSLQKVGPEFYGNAVEPFRSLKIM 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi108g00001 835 SUPERFAMILY L domain-like 490 822 - -
Gabi108g00001 835 Gene3D Ribonuclease Inhibitor 537 835 IPR032675 -
Gabi108g00001 835 Gene3D - 328 418 IPR042197 -
Gabi108g00001 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 428 IPR027417 -
Gabi108g00001 835 Pfam Rx N-terminal domain 9 97 IPR041118 -
Gabi108g00001 835 FunFam Probable disease resistance protein At1g63360 414 500 - -
Gabi108g00001 835 Gene3D - 419 499 IPR036388 -
Gabi108g00001 835 PANTHER DISEASE RESISTANCE PROTEIN RP 54 832 IPR044974 GO:0006952
Gabi108g00001 835 SMART LRR_typ_2 575 597 IPR003591 -
Gabi108g00001 835 SMART LRR_typ_2 598 621 IPR003591 -
Gabi108g00001 835 SMART LRR_typ_2 645 668 IPR003591 -
Gabi108g00001 835 PRINTS Disease resistance protein signature 365 379 - -
Gabi108g00001 835 PRINTS Disease resistance protein signature 195 210 - -
Gabi108g00001 835 PRINTS Disease resistance protein signature 643 659 - -
Gabi108g00001 835 PRINTS Disease resistance protein signature 268 282 - -
Gabi108g00001 835 Gene3D - 151 321 IPR027417 -
Gabi108g00001 835 Gene3D - 36 138 - -
Gabi108g00001 835 Pfam NB-ARC domain 176 413 IPR002182 GO:0043531
Gabi108g00001 835 Pfam Leucine rich repeat 577 632 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi108g00001 Gabi-Chr108 11890 14394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi108g00001 172 817 WRKY Transcription Factor Family AT5G45050 21.089 1.40e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi108g00001 - - cam:101492735 1275.77