Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1077g00011 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACTTTGATGAGGAAAATTACATGGAAGAAATGGATGATGATGATGTTGAAGAACATGTAGATGATGATGGAGTGGATGGAAGTGGTGATGAAAATGTTAAAGAACATGAATATGAAGACTCAGCCGTAGTGGATGGTGGGAAAGATGAAATAGATAGAAGTGACATTGCTACTGAGTCTGTAGAGGATGGGCAAAATCCATCTTTCATGGATGAAGAAGAGAAACAGAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGCTCAGAAGTATTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTGAGGGAATTGTGCGAGCCTATAGGTGATATTTTTGAGGTGCGATTAATGAAGGATAGGGACACTGGAGAAGGCAAGGGTTATGCTTTTGTTGCTTTTAAAACAAAAAAAGCTGCACAAAAGGCCATTGAAGAGTTACACAATAAGGAATTTAAGAGTAAAACTTTAAGGTGTTCACTATCTGAGACAAAACAAAGATTGTTTATTGGTAATGTTCCAAAAAATTTGACTGAGGATGAGTTTAGGAAAGCAGTTGAGGGTATTGGTCCTGGCGTTGAAAACATTGAGCTCATAAAGGACCCTCAGAATCCAAGCAGGAATCGTGGCTTTGCGTTTGTCTTATATTACAACAATGCATGTGCTGATTATTCACGGCAAAAAATGTCAACTGCAAGTTTCAAGCTGGATGGTAATACCCCAACTGTCACATGGGCAGATCCAAAGAATTCATCTGATCATTCTGCTTCTTCACAGGTTAAAGCTCTTTATGTGAAAAATATACCCGAGAATACTACTACTGAACAACTGAAGGAACTATTTAATCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTAAAGGCTATAAAAGATACGGAGAAATATGAAATTGATGGCCAATTACTTGAGGTTGTTCTTGCCAAGCCTCAAACCGAGAAAAAATCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCTTCATCCACCTCCTGTGTATGGTGCTGGTTATCCTGGAAATCTTTATGGCTCTTTAGGGGGTGGATATGGTGTTGCAGCTGGTTTTCAACAGCCAGTGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAGATGGTTCCAATGGTATTACCAGATGGTCAAATTGGCTATGTTCTTCAACAACCTGGGGTACAGATGCCGGCTCCCCGACCACGCCGGGGCAATGGTCCAAGTGGTCAGCCAGGACGAGCCGGAGGTAGTGGCAATGATGAGGGCAATCGTGGTAAAAGGTACCGACCCTACTAG 1422 0.4241 MSEGAEIDERVDFDEENYMEEMDDDDVEEHVDDDGVDGSGDENVKEHEYEDSAVVDGGKDEIDRSDIATESVEDGQNPSFMDEEEKQKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPIGDIFEVRLMKDRDTGEGKGYAFVAFKTKKAAQKAIEELHNKEFKSKTLRCSLSETKQRLFIGNVPKNLTEDEFRKAVEGIGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSTASFKLDGNTPTVTWADPKNSSDHSASSQVKALYVKNIPENTTTEQLKELFNRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAIKDTEKYEIDGQLLEVVLAKPQTEKKSDGGYAYNPGLHPNLHPPPVYGAGYPGNLYGSLGGGYGVAAGFQQPVIYGRGPMPAGMQMVPMVLPDGQIGYVLQQPGVQMPAPRPRRGNGPSGQPGRAGGSGNDEGNRGKRYRPY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1077g00011 473 MobiDBLite consensus disorder prediction 8 36 - -
Gabi1077g00011 473 Gene3D - 181 261 IPR012677 -
Gabi1077g00011 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 434 - -
Gabi1077g00011 473 MobiDBLite consensus disorder prediction 1 79 - -
Gabi1077g00011 473 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
Gabi1077g00011 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 352 IPR000504 GO:0003723
Gabi1077g00011 473 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 180 - -
Gabi1077g00011 473 SUPERFAMILY RNA-binding domain, RBD 270 367 IPR035979 GO:0003676
Gabi1077g00011 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 262 IPR000504 GO:0003723
Gabi1077g00011 473 CDD RRM_SF 102 174 - -
Gabi1077g00011 473 SMART rrm1_1 101 174 IPR000504 GO:0003723
Gabi1077g00011 473 SMART rrm1_1 276 348 IPR000504 GO:0003723
Gabi1077g00011 473 SMART rrm1_1 181 258 IPR000504 GO:0003723
Gabi1077g00011 473 MobiDBLite consensus disorder prediction 37 70 - -
Gabi1077g00011 473 MobiDBLite consensus disorder prediction 435 473 - -
Gabi1077g00011 473 SUPERFAMILY RNA-binding domain, RBD 91 180 IPR035979 GO:0003676
Gabi1077g00011 473 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 181 261 - -
Gabi1077g00011 473 Gene3D - 7 180 IPR012677 -
Gabi1077g00011 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Gabi1077g00011 473 Gene3D - 263 395 IPR012677 -
Gabi1077g00011 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 248 IPR000504 GO:0003723
Gabi1077g00011 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 345 IPR000504 GO:0003723
Gabi1077g00011 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 172 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1077g00011 Gabi-Chr1077 187465 192756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1077g00011 102 449 Eukaryotic Initiation Factors Gene Family AT2G23350 25.707 4.44e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1077g00011 K13161 - gmx:100790907 738.028