LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1077g00007	ATGGGGAAGAAGGGTAGTAGCTCGTGGTTAACTGCTGTCAAAAGAGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTAGCAAAAGAAGAGAGGACTATGATCAAGAAGAAGATGAAGAGAAGAAGAGAGAAAAAAGAAGATGGATATTCAGAAAACCTGTGAATCATGAAACTGTGATAACACAACAAACCCCAACAAAGTTGAAGCATGATGTGGCTGAAACTACTGAAAGTGGGGCTTCAAGGAAAGACCAAGATCAAAAGCATGCGCTTGCTATGGCGGTTGCCACCGCCGAGGCTGCCATGGCCACCGCTCAGGCTGCTGTTGAGGTTGCAAGGTTGACCAAACCTGCTAGTCTTGCTAGGGAGCATTATGCTGCTACTTTGATTCAAACTGCTTTCAGAGGATATCTGGCTAGAAGAGCACTTCGTGCACTTAAGGGGTTGGTGAAGTTGCAAGCTTTAGTAAGAGGTCATAATGTTAGGAAGCAAGCAAAGATGACACTTCGGTGCATGCAGGCTTTGGTTAGAGTACAAGCAAGGGTCCTTGACCAGCGGATAAGGTCTTCTTCACTTGAAGGAAGTAGAAAATCCACTTTCAGTGACACTACTAGCGTTTGGGAATCTCGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAGGGAAGCAGCATTGCAGATGATTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCCATGTTGAAGCAGAGGAAGGAAGCAGCTATGAAAAGGGACAAGTCCTTGTCCCAAGCTTTTTCTCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGCTCGAAGAGAGACCGAAATGGCTCGATCGGTGGATGGCTACGAAGCCATGGGAGAGTAGGGGAAGAGCTTCAACTGATCAAAGAGACCCCATTAAAACTGTTGAAATTGACACCTCTCAACCTTACTCATATCTTGGAACCAATTATAGAAGATCACATCCAAATTATCAGTATAACCCAAACCACCAACCACAAAGACATTCCATTGCTTCGCCACTTCACAGAACACACCAAAATGGATCAATTCACCAATCCCCTGCAACCCCTTCTCCTGCAAAATCAAGACCAATCCAAGTCCGGTCCGCAAGCCCTCGGTGTGTTAGAGAAGATAGAAGCTACCAGACCTCTCAAACACCAAGCCTGAGGTCTAATTATCATTATATAGGAAACTTGTACCAAAATGGTAGGGTTGGAACAAGTAATGGTGGTGCTGCATTGCCTAATTACATGGCAGCAACTGAATCTGCAAAGGCTCGAATTCGATCACAGAGTGCGCCGAGGCAGAGGCCAGGCACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTCTCTTTCCCTGCTCCTGATCCTTATAATGTAGGAGTGAATTATGGAAATTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTTGGTGTATCACATTTTGGTTTGGAGCAGCAATCCACTTACTCTTCTTGCTGCACTGAGAGTCTTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGAAGATGGTTGAGATGA	1611	0.4513	MGKKGSSSWLTAVKRAFRSPTKDSDKRSSKRREDYDQEEDEEKKREKRRWIFRKPVNHETVITQQTPTKLKHDVAETTESGASRKDQDQKHALAMAVATAEAAMATAQAAVEVARLTKPASLAREHYAATLIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSSLEGSRKSTFSDTTSVWESRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLKQRKEAAMKRDKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWESRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHQPQRHSIASPLHRTHQNGSIHQSPATPSPAKSRPIQVRSASPRCVREDRSYQTSQTPSLRSNYHYIGNLYQNGRVGTSNGGAALPNYMAATESAKARIRSQSAPRQRPGTPERDRVGSAKKRLSFPAPDPYNVGVNYGNYGHSLRSPSFKSVGVSHFGLEQQSTYSSCCTESLGGEVSPSSTGDLRRWLR	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	441	473	-	-
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	72	90	-	-
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	1	49	-	-
	Gabi1077g00007	536	ProSiteProfiles	IQ motif profile.	125	153	IPR000048	GO:0005515
	Gabi1077g00007	536	PANTHER	IQ-DOMAIN 5-RELATED	1	473	-	-
	Gabi1077g00007	536	ProSiteProfiles	IQ motif profile.	149	176	IPR000048	GO:0005515
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	302	317	-	-
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	18	49	-	-
	Gabi1077g00007	536	Pfam	IQ calmodulin-binding motif	128	146	IPR000048	GO:0005515
	Gabi1077g00007	536	Pfam	IQ calmodulin-binding motif	152	168	IPR000048	GO:0005515
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	302	405	-	-
	Gabi1077g00007	536	FunFam	IQ-domain 11	124	175	-	-
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	514	536	-	-
	Gabi1077g00007	536	SMART	iq_5	124	146	IPR000048	GO:0005515
	Gabi1077g00007	536	SMART	iq_5	147	168	IPR000048	GO:0005515
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	61	90	-	-
	Gabi1077g00007	536	Gene3D	-	122	178	-	-
	Gabi1077g00007	536	MobiDBLite	consensus disorder prediction	318	381	-	-
	Gabi1077g00007	536	Pfam	Protein of unknown function (DUF4005)	387	485	IPR025064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1077g00007	Gabi-Chr1077	157367	160101	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1077g00007	9	536	IQD Protein Family	AT4G00820	57.713	3.60e-179	513

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1077g00007	-		-	gmx:100786729	872.463