Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1077g00005 ATGTCTCAACAAATGCAATCTCAGATGGTGGGTGGTAACATTCTGGACCAGCATAATGACACTACATTTACCAAAATCTTTGTGGGAGGGTTAGCTTGGGAGACCAAGAGGGACACAATGGGGAGGTATTTTGAGCAATTTGGAGAGATCCTGGAGGCTGTTGTTATCACAGATAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCATGAGAGCTTGTCAGAACCCATCTCCAATTATTGATGGGAGGAGGGCAAACTGCAATCTTGCATCTCTTGGTGCAAACAAGAATCGACCACCAACTCTTCAGCATGGTGCAGGAAGGTTGAGGCCTCCACCTGGACTGGTGGAATCACCTGCTTATCATAGTTCTACATCTACATTTTTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAACTTACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGAGCTATTATAGTGTATATGGAGTTCAACAATTTTCACCTTACCTCCCATCTGTGGGAGCATCTGGGGCAGTAGGGTTGATCAATAATATCTACCCTTTCTATGGTCAATATGCACAGAGTATCCAAACTCATGGTTTTGGAGTTCAATACCCTCAAATGGCACAATTTTCATTTATGCCTCAGCATTATGGCTCCGCTGGGATATTGTCATTTCCTTCTTCACTGGCAGTGCCAACTACTAGTGCAGCAACTGCAACTGCAACTTCAACCCCAACTACAATAATATCAGCAAGTGTGGCAGCAACTGGGGTTGTTGGTAGTTCAAAAACCTCTGGAACAGATTCTAAACAAAAGTCTACATCTTGA 861 0.4344 MSQQMQSQMVGGNILDQHNDTTFTKIFVGGLAWETKRDTMGRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPIIDGRRANCNLASLGANKNRPPTLQHGAGRLRPPPGLVESPAYHSSTSTFFHQPTRQYTFPYSTYGYSGYSQDTLYPTSYYSVYGVQQFSPYLPSVGASGAVGLINNIYPFYGQYAQSIQTHGFGVQYPQMAQFSFMPQHYGSAGILSFPSSLAVPTTSAATATATSTPTTIISASVAATGVVGSSKTSGTDSKQKSTS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1077g00005 286 Gene3D - 1 116 IPR012677 -
Gabi1077g00005 286 PANTHER BOULE-RELATED 6 253 - -
Gabi1077g00005 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Gabi1077g00005 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Gabi1077g00005 286 SMART rrm1_1 25 97 IPR000504 GO:0003723
Gabi1077g00005 286 SUPERFAMILY RNA-binding domain, RBD 13 122 IPR035979 GO:0003676
Gabi1077g00005 286 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1077g00005 Gabi-Chr1077 148803 150670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1077g00005 7 100 C2H2 Transcription Factor Family AT2G19380 39.362 8.91e-16 75.5