Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1077g00004 ATGCCGGAAAACATGAGTATATCTGTGAATGGACAATCTCAAGTCCCTCCTGGTTTCAGGTTTCATCCAACCGAAGAGGAGCTTCTACAATACTACTTGAGGAAAAAGGTCTCTTATGAGAAGATTGACCTCGATGTGATTCGAGACGTTGATCTCAACAAGCTCGAGCCATGGGACATTCAAGAGAAGTGCAAAATAGGAACCACTCCACAAAATGATTGGTATTTCTTTAGCCACAAAGACAAGAAGTATCCCACAGGAACACGTACCAATCGAGCCACGACTGCAGGGTTCTGGAAAGCCACTGGGCGTGACAAAGTGATATACAGCAACGGGAAGAGAATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGTCGTGCTCCACATGGCCAAAAATCTGACTGGATCATGCATGAATACAGACTTGACGATAATAACACCAGCGACACCAATATTGTGTCGAATGTGATGGGAGATGGTGGCCAAGAAGAAGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCTTTAGCCTCATCAATCTCTGGGGAAGGTAGAAGAAGCCACTTGTTTGATTCTTGCGATGAGGGTGCTTTGGAGCAAATACTTCAGCAAATGGGAAGGGGTAGTTGCAAGGAAGAGAATTACGAAGCCAATTACAATTATGGAAGGTTTGGGAACAGGCCTTATGAGACAGGACTCAACAATAACAATAATGGGGGCTACCATGATAGGTTCTTGAAACTCCCAAGCCTAGAGAGTCCAAAATCGACAAGCATGGAGAGCCAGCAGAATAATAACACTGATCATAACAATGATGTCAATAACAACAATAATAATAATAATGGGTACCATCCCATTATTCCAGTAGAGATGGCCACAGATAATGAAGGGTCATTCACAACCCACCATGTGAATAGTGCTGCTGACCCCAACATGGTTCATCATCCATATGAGGCATCATCATCATCAATGGTGGTAGGATCAGGTGGTGGTGGTAGTAGTAGTATTGGCCTCACCAATTGGGTAGCCTTGGATCGACTTGTTGCTTCTCAACTGAATGGCCAAACAGAGACTTCTAGGCAATTGGCATGCTTCAATGACCCCACCATGGTGTATTGCACCAACGACCATGATCTGCAATTGCCAACCCTTCGATCATCATCATCATCTTCATCAACATCAACACACACTAGAGCTGTTGCTGCTGCTGCTGCTGCTACTTACATTAGTCCCACACAGGATTACACCACCAGTGAGATTGACCTTTGGAACTTTGCTCGATCCACGACGTCGTTATTGTCATCCTCTGAACCTCTATGCCACGTGTCGAACACGTCAGTGTAG 1374 0.4491 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNHLKTLDSPLASSISGEGRRSHLFDSCDEGALEQILQQMGRGSCKEENYEANYNYGRFGNRPYETGLNNNNNGGYHDRFLKLPSLESPKSTSMESQQNNNTDHNNDVNNNNNNNNGYHPIIPVEMATDNEGSFTTHHVNSAADPNMVHHPYEASSSSMVVGSGGGGSSSIGLTNWVALDRLVASQLNGQTETSRQLACFNDPTMVYCTNDHDLQLPTLRSSSSSSSTSTHTRAVAAAAAATYISPTQDYTTSEIDLWNFARSTTSLLSSSEPLCHVSNTSV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1077g00004 457 FunFam NAC domain-containing protein 24 179 - -
Gabi1077g00004 457 MobiDBLite consensus disorder prediction 262 294 - -
Gabi1077g00004 457 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Gabi1077g00004 457 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Gabi1077g00004 457 Coils Coil 269 289 - -
Gabi1077g00004 457 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 284 - -
Gabi1077g00004 457 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Gabi1077g00004 457 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Gabi1077g00004 457 MobiDBLite consensus disorder prediction 262 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1077g00004 Gabi-Chr1077 104320 106397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1077g00004 1 456 NAC Transcription Factor Family AT2G46770 51.288 1.93e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1077g00004 NAM 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1077g00004 - - gmx:100793308 644.81