Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1074g00002 ATGGCCTTCTTTGGAGATTCAATAGGGGATTTCTCAAGGATTTGTCTGAAGGATTTTGATTTGGCTTCTTTCTGTTCTCAAAGGAGCATAATAGACACTATAAATATACTTTTTGTCTGTGTCTTTTACACTTCTTTGCTTATCAGTTTGATCAGAAAAAGTTCCAGAAGTGGTAGCAACATAAAAAACTGGATTTTCCCAGTTGTCTCAATCTGTTGTGCTCTCATTGGCATTGTGTTTTTGAGTATTGGATTGTGGAATCTCATTGTCAAAACTGGTAACTCTGAGCAGCTGGGCTGGTTAGCTTGCATTGTCAGAGGATTCATTTGGGTTTCTTTAACAGTTTCTTTGCTTGTTCAGAGACACAAATGGATAAAAATTTCAAACTCTATCTGGTGGGCATCTTCTTGTGTGTTGGTTTCAGCTCTCAACATTGAAATTCTGTTTAAAGAGCATGCAATTGAAGCTTTTGATATCGTACAATGGCTTGTACACTTCCTTCTTCTCTTCTGTGCTTTCCAAAATCTTGGTTATTTTGTAACTCAAAGTACCCCAGAAAGTTTATCTGAGCCACTTTTAGCTCAGAAAGTTGAAACCAAAAAAACTGGACTAGGCCATGCTACTTTTCTCAGCAAGTTGATTTTCTCTTGGGTCAATTCTTTACTCATTCAGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTTCTCTTGTTTCTGAAGATGAAGCTGACTCGGCCTACAAAAAATTCTTGCAAACATGGGAATTTCTTGTAAGAGAGAGGAGCAAGAACAATACCAAAAACTTGGTTCTTTGGTGTGTAGCTAGAATGTACTTAAATGAGAACATATTAATAGCATTTTACACATTACTTAGAACTATTTCAGTTGTAGTTTCTCCTCTATTGCTCTATGCTTTTGTAAACTACTCTAATAGCACTGAGGCAGATCCCAAAGAAGGTCTTTCCCTACTTGGTTTTCTGATTCTGACCAAAGTGGTTGAGTCTTTGTCCCAGAGACATCGGTTTTTTGATTCGAGGAGGTCAGGGTTGAAAATGAGATCAGCTCTAATGGTGGCAGTGTATCAAAAACAGCTAAAGCTTTCTAGCTCAGCTAGGAGAAGACACTCAAGTGGTGAAATTGCGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATGTAACATGGGCTTATGCATTGCAACTTTTTCTCTCCATTGGTGTCCTTTTTGGTGTTGTGGGTCTTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTCATATGTGGACTTCTCAATGTACCATTTGCAAAGTTTCTACAAAATTGTCAGTCACAATTCATGATTGCACAGGATGAGCGTCTGAGATCAACTTCAGAAATTCTGAATAGTATGAAAATCATTAAGTTGCAATCCTGGGAGGATAAGTTCATGAACTTAGTTGAGTCCCTACGTGCTAAAGAGGTCGAATGGTTGTCTAAGGCACAGATCTTGAAAGCTTATGGATCATTTCTTTATTGGATGTCCCCTACCATTGTTTCTTCTGTTGTTTTCCTCGGATGTGCTCTTTTCAATAGTGCACCATTAAATGCTGGAACCATTTTCACAGTTCTTGCAACGTTGAGGATCATGGGAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTGTTATGATGCAAGTTAAGGTCTCCTTTGATCGTCTCAATAACTTTTTGTTTGATGATGAGCTAAGTAATGATGAAAATGGAAGGAGTATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGCTGGCAACTTCATTTGGGATCAGGAATCAGTGTCACCAACTTTAAGAAATGTGAATTTAGAAATCAAATGGGGACAGAAAACAGCAGTTTGTGCACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCTAAGACTTCAGGAACAGTTAATGTAGGTGGCACTCTAGCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGGACGGTTCAAGATAATATACTCTTTGGCAAGCCGATGGACAAAACAAGATATGAGAATGCCATTAAAGTTTGTGCCTTGGATAAGGATATTCATGATTTTAGCCATGGTGATCTCACAGAAATAGGTCAGCGAGGGATTAATATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATGATGCTGATATCTATCTTCTTGATGACCCTTTCAGTGCAGTTGATGCGCATACTGCTGCTATTCTGTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTTATTCTAGTGACTCATCAAGTGGAGTTCCTCTCAGAAGTTGATAAAATCCTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGGATCTCCTGACAGCTGGGACAGCCTTTGAACAACTTGTGAGTGCCCACAAAGAGACAATTTCAGAGATGGATCAAAATAATGAAAACAAAGGAGGATCTGAAAATGAGGTTGTGGCTCATCCACAGGAGTCTCATGGTTTTCATCTCACTAAAAATCAAAGTGAGGGTGAGATCTCTACCAAGGGTCAACTTGGGGTGCAGCTTACACAAGAAGAAGAAAAAGTGATTGGTAACGTTGGATGGAAGCCATTCTGGGATTATATTTCCTTTTCCAGGGGGTTATTCATGCTGTGTTTGGTCATGTTAGGACAATCTGCTTTTGTTGCTTTGCAGACTGCATCAACATATTGGCTTGCTATAGCCATTGAAATTCCAAAAATAACTAGTGGCACCTTGATTGGAGTTTACTCTTTAATTTCATTTGTTGGTGCTGCTTTTGTATATCTAAGGTCTTACCTGACTGCACTTCTTGGATTAAAGGCTTCTACAACCTTCTTCTCTAGTTTCACTACAGCTATCTTTAAGGCTCCTATGTTGTTCTTTGACTCAACCCCTATAGGGAGGATTTTAACCCGAGCTTCTTCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATGACTTTTGTATTGTCTGTGGCAATTGAAATTCTGGTGACAATTTGTGTAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGATTGCATCAAAATATATTCAGGGATATTATCAAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTGGACAGATTTTTCAAAAATTACCTAAAGCTGGTGGACACAGATGCAGCACTGTTCTTTCATTCTAATGTGACCATGGAATGGTTAATTTTAAGAATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTGTTAATTATTCTACTCCCTCAGGGATACGTGTCCCCAGGCCTTGTAGGACTTTCTCTTTCTTATGCTTTCACATTGACAGCATCCCAAGTATTTTGGACTAGATGGTTTTGCAACTTCTCAAACTATATTATCTCAGTTGAAAGAATCAAACAATTCATTAACATACCAGCCGAGCCACCTGCCATTGTGGAGGATAAAAGGCCTCCATCTTCATGGCCTTCTAAGGGTAGGATTGATCTTCAAGCCTTAGAGATTAGATATCGTCCAAATGCTCCATTAGTTCTTAAGGGTATCACTTGTACATTCAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACCCTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTGCAAGAGGTGATATTCTTATAGATGGGATTAACATAGGCTCAATGGGGTTGAAGGATTTGAGAACAAATCTAAGCATCATACCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACAATTAGCAGTCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGCCAACTGTTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCCACAGATGCTATTCTACAAAGAATAATTAGACAAGAATTTGCACAATGCACAGTTATAACCGTGGCTCATAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAAATGTTGGAATATGATGAGCCTTCAAAGCTAATGGAAACCAATTCTTCATTCTCTAAGCTGGTTGCTGACTATTGGTCTAGCTGCAGGAAGAATTCCTCCCAAAACATTAGGAGTAGCCAGTAA 4410 0.3952 MAFFGDSIGDFSRICLKDFDLASFCSQRSIIDTINILFVCVFYTSLLISLIRKSSRSGSNIKNWIFPVVSICCALIGIVFLSIGLWNLIVKTGNSEQLGWLACIVRGFIWVSLTVSLLVQRHKWIKISNSIWWASSCVLVSALNIEILFKEHAIEAFDIVQWLVHFLLLFCAFQNLGYFVTQSTPESLSEPLLAQKVETKKTGLGHATFLSKLIFSWVNSLLIQGYSKPLALEDIPSLVSEDEADSAYKKFLQTWEFLVRERSKNNTKNLVLWCVARMYLNENILIAFYTLLRTISVVVSPLLLYAFVNYSNSTEADPKEGLSLLGFLILTKVVESLSQRHRFFDSRRSGLKMRSALMVAVYQKQLKLSSSARRRHSSGEIANYIAVDAYRMGEFPWWFHVTWAYALQLFLSIGVLFGVVGLGALPGLVPLLICGLLNVPFAKFLQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEDKFMNLVESLRAKEVEWLSKAQILKAYGSFLYWMSPTIVSSVVFLGCALFNSAPLNAGTIFTVLATLRIMGEPVRMIPEALSVMMQVKVSFDRLNNFLFDDELSNDENGRSIKQCSVNAVEIQAGNFIWDQESVSPTLRNVNLEIKWGQKTAVCAPVGAGKSSLLYAILGEIPKTSGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDKTRYENAIKVCALDKDIHDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDKILVMEGGKVIQSGSYEDLLTAGTAFEQLVSAHKETISEMDQNNENKGGSENEVVAHPQESHGFHLTKNQSEGEISTKGQLGVQLTQEEEKVIGNVGWKPFWDYISFSRGLFMLCLVMLGQSAFVALQTASTYWLAIAIEIPKITSGTLIGVYSLISFVGAAFVYLRSYLTALLGLKASTTFFSSFTTAIFKAPMLFFDSTPIGRILTRASSDLSILDFDIPYSMTFVLSVAIEILVTICVMVSVTWQVLIVAVPAMIASKYIQGYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDAALFFHSNVTMEWLILRIEVLQNLTVFTAALLIILLPQGYVSPGLVGLSLSYAFTLTASQVFWTRWFCNFSNYIISVERIKQFINIPAEPPAIVEDKRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGINIGSMGLKDLRTNLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISSLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFAQCTVITVAHRVPTVIDSDMVMVLSYGKMLEYDEPSKLMETNSSFSKLVADYWSSCRKNSSQNIRSSQ 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1074g00002 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1074g00002 1469 Gene3D - 606 848 IPR027417 -
Gabi1074g00002 1469 CDD ABCC_MRP_domain1 599 799 - -
Gabi1074g00002 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Gabi1074g00002 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Gabi1074g00002 1469 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Gabi1074g00002 1469 FunFam Multidrug resistance protein associated1 578 842 - -
Gabi1074g00002 1469 SMART AAA_5 1244 1429 IPR003593 GO:0016887
Gabi1074g00002 1469 SMART AAA_5 626 799 IPR003593 GO:0016887
Gabi1074g00002 1469 Pfam ABC transporter transmembrane region 936 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1074g00002 1469 Pfam ABC transporter transmembrane region 286 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1074g00002 1469 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Gabi1074g00002 1469 Gene3D ABC transporter type 1, transmembrane domain 271 581 IPR036640 GO:0005524|GO:0016020
Gabi1074g00002 1469 FunFam ABC transporter C family member 10 267 581 - -
Gabi1074g00002 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 821 IPR027417 -
Gabi1074g00002 1469 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Gabi1074g00002 1469 Gene3D ABC transporter type 1, transmembrane domain 870 1199 IPR036640 GO:0005524|GO:0016020
Gabi1074g00002 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 1455 - -
Gabi1074g00002 1469 Gene3D - 1201 1452 IPR027417 -
Gabi1074g00002 1469 CDD ABC_6TM_ABCC_D2 900 1193 IPR044726 GO:0140359
Gabi1074g00002 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1074g00002 1469 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Gabi1074g00002 1469 SUPERFAMILY ABC transporter transmembrane region 272 579 IPR036640 GO:0005524|GO:0016020
Gabi1074g00002 1469 FunFam ABC transporter C family member 3 1201 1452 - -
Gabi1074g00002 1469 FunFam ABC transporter C family member 5 867 1199 - -
Gabi1074g00002 1469 SUPERFAMILY ABC transporter transmembrane region 889 1200 IPR036640 GO:0005524|GO:0016020
Gabi1074g00002 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Gabi1074g00002 1469 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1074g00002 Gabi-Chr1074 11913 19561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1074g00002 584 844 Calmodulin-binding Proteins AT2G36910 25.623 5.77e-21 98.6