Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1073g00016 ATGAGGTTGGGGTGTGATCTCTTGCAACACTGCTTCACTAGCTCTTCTTCTGATACATTTCCAAAGGATGAAAAGTTGAAGTGGCAAATCTTCCACTATAACGAACTTGCCAAAGCCACAAACAATTTTGATCGATGTAATTGTCGTGGATGGGGAGACTTGGACACAGTATATTATGGCAAACTTGACAATGGATTAGAGATTGCAATTCAACGCTTTCATGAAGAAAAGCGCCAAACATTTCAACAGTTCATCAATGAAAATATGATCCTAAATTACTTGCCCCACAAAAATCTTGTGACGATTTATGGGCGCACCTCTGATGAGGAATCCATGCTAGTACATGAATACCTCTCCAATGGCACTCTTGCTGGTCATCTTCAATGTGAAATTGCAGAAAGCAGCACGTTACCTTGGCTTACCCGATTGGATATTGCCATTGATACTGCAAAAGCATTGGTCTATCTTCACTCTCATGGCATCATCCACTCTGATATAACTTCAAGCAATATTCTCCTAGATAAGAACTTTTGTGCTAAAATTTCTAACTTTCTATTATCAAGGAAACATCCAGAGGGAGTTTCTGCCAATGCTACTACACATGTTGCAAGTGATATAATAGGAACATGTGGTTATATAGATCCGGAGTATCAGCAACATGGCTGTCTTAGCGTACAAAATGATGTGTATAGTTTTGGGGTGGTGTTGATTGAACTTATATCATCAAAGCTTGTTAATTATTGGGAAGGGAGTGACGGTGATAGCTTTGCTACTATTGTAAGTAGAAAAATCCAAAACCAATCATTGGAGGAGCTAGTGGATCCAAGACTTGGCTTCCAATCAGACCATATCATCAAGAAGACAATAATTGCTGTAGCAGAGCTTGCAACTCGTTGCTTGCAATGTCCACTAGAGCTAAGGCCATACATGGTACAGGTGCTAGGGACTCTCCAGTCTGTAAGACCTAAGAAAGATAAAGAAAAACCGAAAAAAGATTCCATTGAAGACTTAACATTGAATAAAAAGGATGATAGCACTAAGAAAAAAACGAGCAATGACACTGATCAAAGTTTCAAATTCTTCAACCTTGCTGAACTGAAAGAAGCCACTGGCGGTTTTAACACTAGTCTCGGAGAGGGTGGGTATGGCACTGTATATTATGGAAAACTTAGAGATGGGCGTAAGGTTGCAGTTAAACGTTTCCATGAAAAGAGTGACAAGACCGTGAAGCAATTCATGAATGAAATTAACATGCTAAGTCTCTTGCAGCATCAAAACCTCGTTTCATTCTATGGATGCACTCATCTAGACAGCAATGAATACCTGCTAGTGTACGAGTATGTCTCAGGTGGCACTCTTTCTAAGCATCTTGATGCATTTTCTGGAAGCAAACTAGCATGGCATACCAGATTGAATATTGCCATTGAGACTGCAACTTCATTGGTATTTCTTCACAATTCAGGTATAATCCACCGTGATGTAAAAGCAAGCAACATTCTGTTGGAAGAGAGTTTTAGAGTTAAAGTGGCAGATTTTGGACTCTCAAGATATTTTCCAGATTTTGTTACCCATGTTTCAACTGTTCCAGTAGGAACTCATGCTTACATAGATCCAGATTATTATCAATCTGGCAGAGTTAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTCAGCTTATATCATCCAAATGCCCAAGTGTCAAGGAGGGAAACGAGTTTGTCACTCTTGCTCACTTTGCAATGAATAAAATCATAAACAAGGCATTGGAGGAGCTCGTGGATCCAAGTCTTGGGTTTGATTCAGACAAAAACATAATGGAAATGATAACAGCTGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGTCCCAAGGAACTAAGACCATCTATGAAACAGGTGCTAGAGATCCTCAAGGGCATAAGGAAGGGAACATGGGGATTCAACCAGATAACATAG 1965 0.3995 MRLGCDLLQHCFTSSSSDTFPKDEKLKWQIFHYNELAKATNNFDRCNCRGWGDLDTVYYGKLDNGLEIAIQRFHEEKRQTFQQFINENMILNYLPHKNLVTIYGRTSDEESMLVHEYLSNGTLAGHLQCEIAESSTLPWLTRLDIAIDTAKALVYLHSHGIIHSDITSSNILLDKNFCAKISNFLLSRKHPEGVSANATTHVASDIIGTCGYIDPEYQQHGCLSVQNDVYSFGVVLIELISSKLVNYWEGSDGDSFATIVSRKIQNQSLEELVDPRLGFQSDHIIKKTIIAVAELATRCLQCPLELRPYMVQVLGTLQSVRPKKDKEKPKKDSIEDLTLNKKDDSTKKKTSNDTDQSFKFFNLAELKEATGGFNTSLGEGGYGTVYYGKLRDGRKVAVKRFHEKSDKTVKQFMNEINMLSLLQHQNLVSFYGCTHLDSNEYLLVYEYVSGGTLSKHLDAFSGSKLAWHTRLNIAIETATSLVFLHNSGIIHRDVKASNILLEESFRVKVADFGLSRYFPDFVTHVSTVPVGTHAYIDPDYYQSGRVSDKSDVYSFGVVLFQLISSKCPSVKEGNEFVTLAHFAMNKIINKALEELVDPSLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLEILKGIRKGTWGFNQIT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1073g00016 654 ProSiteProfiles Protein kinase domain profile. 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00016 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Gabi1073g00016 654 FunFam receptor-like protein kinase FERONIA 337 447 - -
Gabi1073g00016 654 Gene3D Transferase(Phosphotransferase) domain 1 118 344 - -
Gabi1073g00016 654 Gene3D Transferase(Phosphotransferase) domain 1 448 648 - -
Gabi1073g00016 654 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 344 647 IPR044652 GO:0004672
Gabi1073g00016 654 ProSiteProfiles Protein kinase domain profile. 371 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00016 654 ProSitePatterns Tyrosine protein kinases specific active-site signature. 161 173 IPR008266 GO:0004672|GO:0006468
Gabi1073g00016 654 SUPERFAMILY Protein kinase-like (PK-like) 355 643 IPR011009 -
Gabi1073g00016 654 FunFam Wall-associated receptor kinase 3 448 654 - -
Gabi1073g00016 654 MobiDBLite consensus disorder prediction 322 352 - -
Gabi1073g00016 654 SMART serkin_6 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00016 654 SMART serkin_6 371 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00016 654 Pfam Protein tyrosine and serine/threonine kinase 52 259 IPR001245 GO:0004672|GO:0006468
Gabi1073g00016 654 Pfam Protein tyrosine and serine/threonine kinase 374 640 IPR001245 GO:0004672|GO:0006468
Gabi1073g00016 654 Gene3D Phosphorylase Kinase; domain 1 345 447 - -
Gabi1073g00016 654 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Gabi1073g00016 654 SUPERFAMILY Protein kinase-like (PK-like) 28 322 IPR011009 -
Gabi1073g00016 654 CDD STKc_IRAK 377 643 - -
Gabi1073g00016 654 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1073g00016 Gabi-Chr1073 198087 200592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1073g00016 341 644 Receptor kinase-like Gene Family AT1G25390 50.629 8.76e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1073g00016 PK_Tyr_Ser-Thr 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1073g00016 - - gsj:114418636 815.453