Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1073g00015 ATGAGGTTGGGGTGTGATCTCTTGCAACACTGCTTCACTAGCTCTTCTTCTGATACATTTCCAAAGGATGAAAAGTTGAAGTGGCAAATCTTCCACTATAACGAACTTGCCAAAGCCACAAACAATTTTGATCGATGTAATTGTCGTGGATGGGGAGACTTGGACACAGTATATTATGGCAAACTTGACAATGGATTAGAGATTGCAATTCAACGCTTTCATGAAGAAAAGCGCCAAACATTTCAACAGTTCATCAATGAAAATATGATCCTAAATTACTTGCCCCACAAAAATCTTGTGACGATTTATGGGCGCACCTCTGATGAGGAATCCATGCTAGTACATGAATACCTCTCCAATGGCACTCTTGCTGGTCATCTTCAATGTGAAATTGCAGAAAGCAGCACGTTACCTTGGCTTACCCGATTGGATATTGCCATTGATACTGCAAAAGCATTGGTCTATCTTCACTCTCATGGCATCATCCACTCTGATATAACTTCAAGCAATATTCTCCTAGATAAGAACTTTTGTGCTAAAATTTCTAACTTTCTATTATCAAGGAAACATCCAGAGGGAGTTTCTGCCAATGCTACTACACATGTTGCAAGTGATATAATAGGAACATGTGGTTATATAGATCCGGAGTATCAGCAACATGGCTGTCTTAGCGTACAAAATGATGTGTATAGTTTTGGGGTGGTGTTGATTGAACTTATATCATCAAAGCTTGTTAATTATTGGGAAGGGAGTGACGGTGATAGCTTTGCTACTATTGTAAGTAGAAAAATCCAAAACCAATCATTGGAGGAGCTAGTGGATCCAAGACTTGGCTTCCAATCAGACCATATCATCAAGAAGACAATAATTGCTGTAGCAGAGCTTGCAACTCGTTGCTTGCAATGTCCACTAGAGCTAAGGCCATACATGGTACAGGTGCTAGGGACTCTCCAGTCTGTAAGACCTAAGAAAGATAAAGAAAAACCGAAAAAAGATTCCATTGAAGACTTAACATTGAATAAAAAGGATGATAGCACTAAGAAAAAAACGAGCAATGACACTGATCAAAGTTTCAAATTCTTCAACCTTGCTGAACTGAAAGAAGCCACTGGCGGTTTTAACACTAGTCTCGGAGAGGGAAAACTTAGAGATGGGCGTAAGGTTGCAGTTAAACGTTTCCATGAAAAGAGTGACAAGACCGTGAAGCAATTCATGAATGAAATTAACATGCTAAGTCTCTTGCAGCATCAAAACCTCGTTTCATTCTATGGATGCACTCATCTAGACAGCAATGAATACCTGCTAGTGTACGAGTATGTCTCAGGTGGCACTCTTTCTAAGCATCTTGATGCATTTTCTGGAAGCAAACTAGCATGGCATACCAGATTGAATATTGCCATTGAGACTGCAACTTCATTGGTATTTCTTCACAATTCAGGTATAATCCACCGTGATGTAAAAGCAAGCAACATTCTGTTGGAAGAGAGTTTTAGAGTTAAAGTGGCAGATTTTGGACTCTCAAGATATTTTCCAGATTTTGTTACCCATGTTTCAACTGTTCCAGTAGGAACTCATGCTTACATAGATCCAGATTATTATCAATCTGGCAGAGTTAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTCAGCTTATATCATCCAAATGCCCAAGTGTCAAGGAGGGAAACGAGTTTGTCACTCTTGCTCACTTTGCAATGAATAAAATCATAAACAAGGCATTGGAGGAGCTCGTGGATCCAAGTCTTGGGTTTGATTCAGACAAAAACATAATGGAAATGATAACAGCTGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGTCCCAAGGAACTAAGACCATCTATGAAACAGGTGCTAGAGATCCTCAAGGGCATAAGGAAGGGAACATGGGGATTCAACCAGATAACATAG 1941 0.3993 MRLGCDLLQHCFTSSSSDTFPKDEKLKWQIFHYNELAKATNNFDRCNCRGWGDLDTVYYGKLDNGLEIAIQRFHEEKRQTFQQFINENMILNYLPHKNLVTIYGRTSDEESMLVHEYLSNGTLAGHLQCEIAESSTLPWLTRLDIAIDTAKALVYLHSHGIIHSDITSSNILLDKNFCAKISNFLLSRKHPEGVSANATTHVASDIIGTCGYIDPEYQQHGCLSVQNDVYSFGVVLIELISSKLVNYWEGSDGDSFATIVSRKIQNQSLEELVDPRLGFQSDHIIKKTIIAVAELATRCLQCPLELRPYMVQVLGTLQSVRPKKDKEKPKKDSIEDLTLNKKDDSTKKKTSNDTDQSFKFFNLAELKEATGGFNTSLGEGKLRDGRKVAVKRFHEKSDKTVKQFMNEINMLSLLQHQNLVSFYGCTHLDSNEYLLVYEYVSGGTLSKHLDAFSGSKLAWHTRLNIAIETATSLVFLHNSGIIHRDVKASNILLEESFRVKVADFGLSRYFPDFVTHVSTVPVGTHAYIDPDYYQSGRVSDKSDVYSFGVVLFQLISSKCPSVKEGNEFVTLAHFAMNKIINKALEELVDPSLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLEILKGIRKGTWGFNQIT 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1073g00015 646 SMART serkin_6 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00015 646 SMART serkin_6 360 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00015 646 FunFam Wall-associated receptor kinase 3 440 646 - -
Gabi1073g00015 646 ProSiteProfiles Protein kinase domain profile. 43 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00015 646 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 344 639 IPR044652 GO:0004672
Gabi1073g00015 646 Gene3D Transferase(Phosphotransferase) domain 1 440 640 - -
Gabi1073g00015 646 Gene3D Transferase(Phosphotransferase) domain 1 118 346 - -
Gabi1073g00015 646 Gene3D Phosphorylase Kinase; domain 1 347 439 - -
Gabi1073g00015 646 ProSitePatterns Tyrosine protein kinases specific active-site signature. 161 173 IPR008266 GO:0004672|GO:0006468
Gabi1073g00015 646 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Gabi1073g00015 646 MobiDBLite consensus disorder prediction 322 352 - -
Gabi1073g00015 646 Pfam Protein tyrosine and serine/threonine kinase 52 259 IPR001245 GO:0004672|GO:0006468
Gabi1073g00015 646 Pfam Protein tyrosine and serine/threonine kinase 382 632 IPR001245 GO:0004672|GO:0006468
Gabi1073g00015 646 ProSiteProfiles Protein kinase domain profile. 362 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00015 646 SUPERFAMILY Protein kinase-like (PK-like) 28 322 IPR011009 -
Gabi1073g00015 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Gabi1073g00015 646 SUPERFAMILY Protein kinase-like (PK-like) 359 635 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1073g00015 Gabi-Chr1073 198087 200592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1073g00015 341 636 Receptor kinase-like Gene Family AT1G25390 48.589 5.93e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1073g00015 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1073g00015 - - gsj:114418636 791.186