Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1073g00013 ATGAGGTTGGGGCGTGATCTCTTTGGCTGCTGCTTCGCTAGTTCTACTTCTGACACATTTCCAAAGCATAGTAAGTTGAAGTGGACTATCCTTCCCTATAAGAAACTTGCAAAAGCCACAAATAATTTTGATCAATGTCATAAACTTGAGAAGAGAGGCACAGCAACGGTATATTATGGCAAACTTGAAGATGGGCGTGAGATTGCAGTCCAGTGCTTTCATGAAGACAAGCGTCACATATTAGAACAGTTCATCAATGAAACTGTTATCCTAAATTACTTGCCTCACAAAAATCTTGTGTCAATTTACGGGTGTGCATCTCATCCCAAGGAATCCATGCTAGTACACGAATACCTATCCCGTGGGACTCTTGATGCTTATCTTCAAGGTGATATAACTAGATATAACACAGATAGGCTTACCAGATTGAATATTGCCATTGATACAGCAAATGCATTGGACTATCTTCACTATTATGGCATCATCCACCGTAATGTAAAGTCCTACAATATATTTCTAGATATGAACTTTTGTGCTAAGGTTGGTAGCTTTCATTTATCAAGAAAACTTCCTGAGGGTGTTTCTGTCGATGCTACGCATGTTACAAGTGATATAATAGGTTCACGTGGTTATGTAGACCCAGATTATGTGTCAAAAGGTTGGCTTAGTGTAAAAAATGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAGCTTATATCATCAAAGCTTGCAAAATATTGGGTTCGGAGTGAAGAGGATAGTCTAGCTACCCTTTCAAGCAGAATTGTTGAAAACCAAGCTTTGGTTGAGCTCGTGGATCCAAGACTTGGCTTCCGATCAGACCTTAAGATCAAGCAGATGATAACTGCTACGGCTGAGCTTGCATTTAGGTGCTTGCAATGTCCACAAGAATTAAGGCCAAACATGGAACAAGTGCTAGAGATTCTCAATGGCATAAGGCAAGGGAGATATGAAACAAACCCAATAAAAGCTTTCAAAATCTTCCACGATGCGGAACTTGAAGAAGCTACTAACCATTTTGACACTTGCCTTGGAAGGGGAGGATTCGGCATTGTCTACTATGGAAAACTTCAAGATGGGAGAGAGGTTGCAATAAAACGTTTCCATGTTGAGACAGAAAAAACCATCCTGCAATTCATGAAAGAAATTGAGATCTTAACTCCCTTGCACCATCCAAATCTGGTTTCACTTTATGGCTGCAGTTCTCGTCATAGCAACAAACACATGCTAGTGTTTGAGTACATTTCCAACGGCACTCTTTCTAAGCATCTTCATGGATCTTCTTGTGGTAAACTACCATGGCCTACTAGGTTGAACATTGCCATTGAAACTGCAACTGCCTTGGCATATCTTGAAGACTCAGGTATCATCCACCGAGATGTGAAAGGGAGCAACATTCTTTTGGATGAGAATTTCAATGTTAAAGTAGCAGATTTTGGACTCTCAAGGTCTCTTCCAGATGGTGTGACTCATGCTTCAACTTTTCCAGTAGGAACTAGGGGTTATATAGATCCAGACTATTATAAAACTGGAAGGGTCTGTATCAAGAGTGATGTCTATAGCTTTGGTGTGGTATTGTTTGAGCTCATATCATCCAACCCTTCAAGTTTAATGAAACGCGGAGAGTATGTGACTCTTGCCCAGTTTGCAATGAGTAAAATGTTAAACAAGGCATTAGAGGAACTAGTGGATCCAAGTCTTGGGTTTGGTTCTGACAAAAATGTAATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCTAAGGAACTCAGACCATCCATGAAACAGGTGCTAGAGACTTTGGAGGGCATAAGGAAGGGGACATGGGGATTCAACCAGATATCATAG 1887 0.4075 MRLGRDLFGCCFASSTSDTFPKHSKLKWTILPYKKLAKATNNFDQCHKLEKRGTATVYYGKLEDGREIAVQCFHEDKRHILEQFINETVILNYLPHKNLVSIYGCASHPKESMLVHEYLSRGTLDAYLQGDITRYNTDRLTRLNIAIDTANALDYLHYYGIIHRNVKSYNIFLDMNFCAKVGSFHLSRKLPEGVSVDATHVTSDIIGSRGYVDPDYVSKGWLSVKNDVYSFGVVLCELISSKLAKYWVRSEEDSLATLSSRIVENQALVELVDPRLGFRSDLKIKQMITATAELAFRCLQCPQELRPNMEQVLEILNGIRQGRYETNPIKAFKIFHDAELEEATNHFDTCLGRGGFGIVYYGKLQDGREVAIKRFHVETEKTILQFMKEIEILTPLHHPNLVSLYGCSSRHSNKHMLVFEYISNGTLSKHLHGSSCGKLPWPTRLNIAIETATALAYLEDSGIIHRDVKGSNILLDENFNVKVADFGLSRSLPDGVTHASTFPVGTRGYIDPDYYKTGRVCIKSDVYSFGVVLFELISSNPSSLMKRGEYVTLAQFAMSKMLNKALEELVDPSLGFGSDKNVMEMITAVAELAFQCVQCPKELRPSMKQVLETLEGIRKGTWGFNQIS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1073g00013 628 Gene3D Phosphorylase Kinase; domain 1 14 118 - -
Gabi1073g00013 628 SMART serkin_6 345 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00013 628 SMART serkin_6 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00013 628 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 332 621 IPR044652 GO:0004672
Gabi1073g00013 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gabi1073g00013 628 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672|GO:0006468
Gabi1073g00013 628 Pfam Protein tyrosine and serine/threonine kinase 55 258 IPR001245 GO:0004672|GO:0006468
Gabi1073g00013 628 SUPERFAMILY Protein kinase-like (PK-like) 27 324 IPR011009 -
Gabi1073g00013 628 Gene3D Transferase(Phosphotransferase) domain 1 422 622 - -
Gabi1073g00013 628 Gene3D Transferase(Phosphotransferase) domain 1 119 332 - -
Gabi1073g00013 628 FunFam Wall-associated receptor kinase 3 422 627 - -
Gabi1073g00013 628 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Gabi1073g00013 628 PRINTS Tyrosine kinase catalytic domain signature 419 432 IPR001245 GO:0004672|GO:0006468
Gabi1073g00013 628 PRINTS Tyrosine kinase catalytic domain signature 457 475 IPR001245 GO:0004672|GO:0006468
Gabi1073g00013 628 ProSiteProfiles Protein kinase domain profile. 1 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00013 628 ProSiteProfiles Protein kinase domain profile. 345 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00013 628 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Gabi1073g00013 628 SUPERFAMILY Protein kinase-like (PK-like) 328 618 IPR011009 -
Gabi1073g00013 628 Gene3D Phosphorylase Kinase; domain 1 333 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1073g00013 Gabi-Chr1073 167471 170439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1073g00013 334 618 Receptor kinase-like Gene Family AT1G25390 56.357 4.93e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1073g00013 PK_Tyr_Ser-Thr 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1073g00013 - - gsj:114418636 952.199