Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1073g00011 ATGCCAATCTTCTCGTTTATATCTCAGTGTTTCTTCAGTGGTGGAAGTAGAAACCACTCTTCACTAGAAATGGGTTCTGATGTGAAGGATAGCCAGTTGGTGCCTGTGGATTCTGAGGAGCCAAGCAGGGGTGATCAAGTGGTGACTGAGGGTTCTAAGGTTCAAAGTAACTGGGTTGAATCATTGCCTGTGATATCTGAGTTACCAAGTAGTCATGGTCAATCAATGTTGGTTGATTCTGAGGTGCTGAATTGCCAATACCACAGAAGTGAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAATAATTTTGACCCTAGTAGAATACTTGGGAGGGGAGGCTATGGGACAGTTTACTTTGGAATACTTAAGGATAAACGTCCTGTTGCAATAAAACGCTTGCATAAAGACAGGTTCAAGATCTTAAGGTTACATGATGAGAAGCTTGAGGGAGAGAGACTTCGAAAGTTCATGAATGAAGTTGCTATGTTAACTTGCTTGAGACAGAAAAATCTTGTCCAACTGTATGGTTGCACCTCTCCTCAGTCCCAAGAACTGCTTCTTGTGCAAGAATTCATTCCTAATGGAACTGTTGCTCGTCATCTTCATGGTAAAGACACCTTGCCATGGTCTACTAGACTAAATATTGCCATACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAACATTATCCACCGAGATGTGAAAACCAGTAATATTCTTCTTGACAGAAGTTTGAATGCTAAAGTTGCAGACTTCGGATTGTCGCGCCTCGTCCCACATGATGTTACCCATATTACCACTGATATTGCTGGGACTACAGGTTATATTGATCCAGAGTATATTGAACATTGCCATCTTTCTGATAAAAGTGATGTATATAGCTTTGGAGTAATATTGTTTGAGCTGATATCATCTTTGCCTGCATTTGATGATGGTGATAAACAGCCCTATCTTTCAGACTTTGCCATGGATAAAATCTTTTGTGGACAACTCCATATGCTTGTTGACCCAAATCTTGGATTTCAATCAGACAAATGGGTAAGTGAAACAATTAATGCAGTGGCAGAGTTGGCATTTAGTTGTCTGCAACGCCAAAGAGACATGAGACCTTCCATGGACGAGGTGTTAAATACTCTTCAGAACATTAGAAGTGGAAGCTCTCAGAAGATTCTTACCTGGGGTCCAAATAGTTGTTACAATTCTACCAAATTTCACATTGTGTCCCGCTTGCCTGATGATTATTTTGAGAAAAAATAG 1269 0.405 MPIFSFISQCFFSGGSRNHSSLEMGSDVKDSQLVPVDSEEPSRGDQVVTEGSKVQSNWVESLPVISELPSSHGQSMLVDSEVLNCQYHRSEIFKYSELEEATNNFDPSRILGRGGYGTVYFGILKDKRPVAIKRLHKDRFKILRLHDEKLEGERLRKFMNEVAMLTCLRQKNLVQLYGCTSPQSQELLLVQEFIPNGTVARHLHGKDTLPWSTRLNIAIQTASALAYLHASNIIHRDVKTSNILLDRSLNAKVADFGLSRLVPHDVTHITTDIAGTTGYIDPEYIEHCHLSDKSDVYSFGVILFELISSLPAFDDGDKQPYLSDFAMDKIFCGQLHMLVDPNLGFQSDKWVSETINAVAELAFSCLQRQRDMRPSMDEVLNTLQNIRSGSSQKILTWGPNSCYNSTKFHIVSRLPDDYFEKK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1073g00011 422 Pfam Protein kinase domain 108 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00011 422 MobiDBLite consensus disorder prediction 22 45 - -
Gabi1073g00011 422 ProSiteProfiles Protein kinase domain profile. 105 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00011 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Gabi1073g00011 422 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Gabi1073g00011 422 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 70 393 IPR044652 GO:0004672
Gabi1073g00011 422 Gene3D Transferase(Phosphotransferase) domain 1 194 398 - -
Gabi1073g00011 422 SMART serkin_6 105 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00011 422 Gene3D Phosphorylase Kinase; domain 1 77 193 - -
Gabi1073g00011 422 SUPERFAMILY Protein kinase-like (PK-like) 90 391 IPR011009 -
Gabi1073g00011 422 FunFam PTI1-like tyrosine-protein kinase 3 194 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1073g00011 Gabi-Chr1073 159071 161914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1073g00011 66 397 Receptor kinase-like Gene Family AT1G25390 52.802 5.07e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1073g00011 Pkinase 7.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1073g00011 - - tpra:123887372 598.971