Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1073g00009 ATGGGTTCTGATGTGAAGGATAGCCAGTTGGTGCCTGTGGATTCTGAGGAGCCAAGCAGGGGTGATCAAGTGGTGACTGAGGGTTCTAAGGTTCAAAGTAACTGGGTTGAATCATTGCCTGTGATATCTGAGTTACCAAGTAGTCATGGTCAATCAATGTTGGTTGATTCTGAGGTGCTGAATTGCCAATACCACAGAAGTGAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAATAATTTTGACCCTAGTAGAATACTTGGGAGGGGAGGCTATGGGACAGTTTACTTTGGAATACTTAAGGATAAACGTCCTGTTGCAATAAAACGCTTGCATAAAGACAGGTTCAAGATCTTAAGGTTACATGATGAGAAGCTTGAGGGAGAGAGACTTCGAAAGTTCATGAATGAAGTTGCTATGTTAACTTGCTTGAGACAGAAAAATCTTGTCCAACTGTATGGTTGCACCTCTCCTCAGTCCCAAGAACTGCTTCTTGTGCAAGAATTCATTCCTAATGGAACTGTTGCTCGTCATCTTCATGGTAAAGACACCTTGCCATGGTCTACTAGACTAAATATTGCCATACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAACATTATCCACCGAGATGTGAAAACCAGTAATATTCTTCTTGACAGAAGTTTGAATGCTAAAGTTGCAGACTTCGGATTGTCGCGCCTCGTCCCACATGATGTTACCCATATTACCACTGATATTGCTGGGACTACAGGTTATATTGATCCAGAGTATATTGAACATTGCCATCTTTCTGATAAAAGTGATGTATATAGCTTTGGAGTAATATTGTTTGAGCTGATATCATCTTTGCCTGCATTTGATGATGGTGATAAACAGCCCTATCTTTCAGACTTTGCCATGGATAAAATCTTTTGTGGACAACTCCATATGCTTGTTGACCCAAATCTTGGATTTCAATCAGACAAATGGGTAAGTGAAACAATTAATGCAGTGGCAGAGTTGGCATTTAGTTGTCTGCAACGCCAAAGAGACATGAGACCTTCCATGGACGAGGTGTTAAATACTCTTCAGAACATTAGAAGTGGAAGCTCTCAGAAGATTCTTACCTGGGGTCCAAATAGTTGTTACAATTCTACCAAATTTCACATTGTGTCCCGCTTGCCTGATGATTATTTTGAGAAAAAATAG 1200 0.4058 MGSDVKDSQLVPVDSEEPSRGDQVVTEGSKVQSNWVESLPVISELPSSHGQSMLVDSEVLNCQYHRSEIFKYSELEEATNNFDPSRILGRGGYGTVYFGILKDKRPVAIKRLHKDRFKILRLHDEKLEGERLRKFMNEVAMLTCLRQKNLVQLYGCTSPQSQELLLVQEFIPNGTVARHLHGKDTLPWSTRLNIAIQTASALAYLHASNIIHRDVKTSNILLDRSLNAKVADFGLSRLVPHDVTHITTDIAGTTGYIDPEYIEHCHLSDKSDVYSFGVILFELISSLPAFDDGDKQPYLSDFAMDKIFCGQLHMLVDPNLGFQSDKWVSETINAVAELAFSCLQRQRDMRPSMDEVLNTLQNIRSGSSQKILTWGPNSCYNSTKFHIVSRLPDDYFEKK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1073g00009 399 SUPERFAMILY Protein kinase-like (PK-like) 67 368 IPR011009 -
Gabi1073g00009 399 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00009 399 MobiDBLite consensus disorder prediction 1 31 - -
Gabi1073g00009 399 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 47 370 IPR044652 GO:0004672
Gabi1073g00009 399 Gene3D Transferase(Phosphotransferase) domain 1 171 375 - -
Gabi1073g00009 399 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Gabi1073g00009 399 Gene3D Phosphorylase Kinase; domain 1 54 170 - -
Gabi1073g00009 399 Pfam Protein kinase domain 85 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1073g00009 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gabi1073g00009 399 FunFam PTI1-like tyrosine-protein kinase 3 171 372 - -
Gabi1073g00009 399 SMART serkin_6 82 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1073g00009 Gabi-Chr1073 159071 161914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1073g00009 43 374 Receptor kinase-like Gene Family AT1G25390 52.802 3.26e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1073g00009 Pkinase 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1073g00009 - - tpra:123887372 579.711