Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1073g00002 ATGCCTGTTGTCACAGAACACATCAAATGGAGAAGACCAAGAAACCAGTTCAGGCACTCCATTTCAGAAACTGATCCAACCCCACAAATCCCTTCCATAGTCCAATCTACTACCTGCAAATCCACAATCTCTTCTTTCCTCTCTAGTTTCTCCAACAACAACAACACCACATCCAATGAAACCACACATACCAGTGGCCAGAACAGGAACAGGAAGAAGAACAGCAACAACAACAGTAACAGTAACAACAACTTCTCTGCAGCAACCTTCAGAGGGCTTGGTTGCACCGCCGGTGCATCGCATGAGGTGTCGGTTCCGGGGGTGATAAGATCCTCCGCGGATTGGCAAGGGAAGAAGAGCAGAAAAAAGAAGCACAGAAGGAACAGTAACAGCAACAAGACATGTCATGGGGTTGTTGATGATGGTCCTAGTCATGGTTCTGCTACCTGTGTGGACTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCTGATGTGGATTGTGTTGTGACCAGGAAGAATGTGTCTGCAAGAGGAAACCTTGATGCGGAGAGAATAACACACAGGGAGCGTCCATCTTATTTTGGAAGGCGCACTGTAAACCCTGAAAGCATTTCGTTTATGGATGATGATCCTGACATTTTTAACTCACGCCCTGGCTTAGAGTCTTTTGGCAGTGCTAGATACTATCGCCACCTTCCACATCCTTCCTCTGATGGTCTTGCTGAGATAATGATAATTCAAGGAAGACTAATAATGGGAGGACGATTAAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGTTATGTGAACACTGGACTTAATGAAGATGAGATGGGACTCAACATAAGCAAAATTAAGCTTTTAATTTCAAATGATGCACCAAAGCATCAAACAGAAAAAAAGTGCACTATTTGTCAGGAGGAGTATGAATCAGATGATGAACTGGGGAGGTTAAGTTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAACTTCTGCCCTGTCTGTAAGCAAGAAGTTGTGGTTCGACGCTGA 1116 0.44 MPVVTEHIKWRRPRNQFRHSISETDPTPQIPSIVQSTTCKSTISSFLSSFSNNNNTTSNETTHTSGQNRNRKKNSNNNSNSNNNFSAATFRGLGCTAGASHEVSVPGVIRSSADWQGKKSRKKKHRRNSNSNKTCHGVVDDGPSHGSATCVDFQDVWCGPGIGFSADVDCVVTRKNVSARGNLDAERITHRERPSYFGRRTVNPESISFMDDDPDIFNSRPGLESFGSARYYRHLPHPSSDGLAEIMIIQGRLIMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGYVNTGLNEDEMGLNISKIKLLISNDAPKHQTEKKCTICQEEYESDDELGRLSCEHSYHFQCIKQWLVHKNFCPVCKQEVVVRR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1073g00002 371 SUPERFAMILY RING/U-box 322 369 - -
Gabi1073g00002 371 MobiDBLite consensus disorder prediction 110 138 - -
Gabi1073g00002 371 SMART ring_2 323 363 IPR001841 -
Gabi1073g00002 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 38 367 IPR045191 GO:0061630
Gabi1073g00002 371 MobiDBLite consensus disorder prediction 49 85 - -
Gabi1073g00002 371 FunFam E3 ubiquitin-protein ligase rnf12-A 290 369 - -
Gabi1073g00002 371 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Gabi1073g00002 371 MobiDBLite consensus disorder prediction 117 131 - -
Gabi1073g00002 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 370 IPR013083 -
Gabi1073g00002 371 Pfam Ring finger domain 322 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1073g00002 Gabi-Chr1073 21067 25435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1073g00002 4 278 C3H Transcription Factor Family AT1G73760 37.500 7.86e-47 159