Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1070g00001 TGGAGCTTGAATAGCTCATTGGAATTGGTAAACTTGTCACACAACTCATTGAGTGGTAGTCTACCAGATGAAGTGGGCCAATTGAAAAATATTAATGTCCTGGATGTCTCTGAGAATCAACTATATGGTAATATTCCCGGAACCATTCGAGATTGCTCAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATCCCATCCTCTTTGGCTTCACTAAAAGGTCTTCGGCATTTAGACCTATCACGAAATCACTTATCTGGATCAATTCCTGATGTTTTGCAGAATATTTCTTTCTTGGAATACTTAAATGTATCATTTAACATGTTGGATGGTGAGGTACCAACAGAAGGTGTCTTTCGAAATGCAAGTGAATTAGTAGTGACCGGGAACAATAAGCTTTGTGGAGGTGTTTTGGAGCTACATCTACCGCTATGCCCAGTCAAAAGTGAGAAACATGCAAAAAACCGCAATTTAGCGATAATTAGTGTAATTGCTTTTCTTCTCATACTGTCATTCATTCTCACTTTCTACTGGATGAGGAAAAGAAGCAAGAAATCATCTTCTGATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATACCAAAACCTACACCATGGAACCGATGGGTTTTCAATAAGAAACTTGATAGGATCTGGAAGTTTTGGCTCTGTATACAAAGGAACTATTGAGCCTGAAGACACAGTTGTTGCCATAAAAGTCCTAAATCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGTTGAATGCAATGCACTCAAAAATATTAGGCATCGGAATCTGGTTAAGATTTTAACATGTTGTTCTAGCACAAATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTGCAGATCAGCATAGATCATTAAACCTTGAGGAGAGGTTAATTATTATTACTGATGTTGCTTTAGCATTTCATTATCTTCACTATGAGTGTGAGCAAACTATCATTCACTGTGATTTGAAGCCTGGCAATGTTCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTTTCTCATACACAAAGTAGCACAGTTGGAATAAAGGGGACCATTGGTTATACTCCTCCAGAGCATGGAATGGGTTTTGCGGTGTCAATTGAAGGTGATATGTATAGTTTCAGAATTTTGATTTTAGAAATGTTAACTGGAAGGAGACCCACAGAAGAAATGTTTCAAGATGGTCATAATCTCCACAATTATGTTGAAATTTCAATTTCAAATCACCTTTTACAGATTGTGGACCCGACTATTCTCCCCTACGAATTAGAACAGGGTACTGGCAATAAGAAACTCGGTCTTACGCATCCTAGTGTAGAGAGATGTTTATTTTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAGTATGATTGAGATCATTAGGGAGCTTAATCTGATCAAAAGTTTCTTCCCTTCTGGGATTTAG 1575 0.381 WSLNSSLELVNLSHNSLSGSLPDEVGQLKNINVLDVSENQLYGNIPGTIRDCSSLEYLYLQGNSFHGIIPSSLASLKGLRHLDLSRNHLSGSIPDVLQNISFLEYLNVSFNMLDGEVPTEGVFRNASELVVTGNNKLCGGVLELHLPLCPVKSEKHAKNRNLAIISVIAFLLILSFILTFYWMRKRSKKSSSDSPTIDQLAKVSYQNLHHGTDGFSIRNLIGSGSFGSVYKGTIEPEDTVVAIKVLNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTNFKGQEFKALVFEYMTNGSLESWLHPAADIADQHRSLNLEERLIIITDVALAFHYLHYECEQTIIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSHTQSSTVGIKGTIGYTPPEHGMGFAVSIEGDMYSFRILILEMLTGRRPTEEMFQDGHNLHNYVEISISNHLLQIVDPTILPYELEQGTGNKKLGLTHPSVERCLFSLFRIALACSMESPKERMSMIEIIRELNLIKSFFPSGI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1070g00001 524 SMART serkin_6 215 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1070g00001 524 PANTHER OS04G0122200 PROTEIN 5 511 - -
Gabi1070g00001 524 Pfam Protein kinase domain 217 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1070g00001 524 SUPERFAMILY Protein kinase-like (PK-like) 188 515 IPR011009 -
Gabi1070g00001 524 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 297 522 - -
Gabi1070g00001 524 Pfam Leucine rich repeat 54 113 IPR001611 GO:0005515
Gabi1070g00001 524 FunFam LRR receptor-like serine/threonine-protein kinase EFR 186 296 - -
Gabi1070g00001 524 Gene3D Ribonuclease Inhibitor 1 158 IPR032675 -
Gabi1070g00001 524 SUPERFAMILY L domain-like 5 138 - -
Gabi1070g00001 524 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 146 - -
Gabi1070g00001 524 Gene3D Phosphorylase Kinase; domain 1 177 296 - -
Gabi1070g00001 524 Gene3D Transferase(Phosphotransferase) domain 1 297 519 - -
Gabi1070g00001 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Gabi1070g00001 524 ProSitePatterns Protein kinases ATP-binding region signature. 221 244 IPR017441 GO:0005524
Gabi1070g00001 524 ProSiteProfiles Protein kinase domain profile. 215 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1070g00001 Gabi-Chr1070 13375 17077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1070g00001 10 520 Receptor kinase-like Gene Family AT3G47570 46.869 5.94e-154 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi1070g00001 Pkinase 8.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1070g00001 - - gmx:100792724 789.645